PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10020911m

Common Name

CARUB_v10020911mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C2H2

Protein Properties

Length: 224aa MW: 24839.2 Da PI: 10.5316

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10020911m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Carubv10020911m 65 FSCNYCQRKFYSSQALGGHQNAH 87 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.42E-6	62	92	No hit	No description
PROSITE profile	PS50157	11.427	65	92	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	67	87	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009640	Biological Process	photomorphogenesis
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MDPSIKGEKE MLKMKKQGHQ DLELGLTLSP RGTTSAELNL IDSFKTTSSS TSHHQQEHLA 60 DPRVFSCNYC QRKFYSSQAL GGHQNAHKRE RTLAKRGQYY KMTFSSSPSS AFAFGHGSVV 120 SRFASMASLP LHGSANNRST LGIQAHSTIH KPLLGRQTTS LSHVLHKKPT IGMMLPDKFH 180 LEVVAGGSNR NVIAANLEKI EQFKNNQEDH NQFKKKIDLT LKL*

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:24808098, ECO:0000305\|PubMed:8980531}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10020911m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269\|PubMed:10794528}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATHZFPA	0.0	L39644.1 Arabidopsis thaliana zinc finger protein 1 (ZFP1) mRNA, complete cds.
GenBank	ATU53501	0.0	U53501.1 Arabidopsis thaliana chromosome I cosmid g8261 DNA (cytosine-5-) methyltransferase, zinc finger protein 1, nucleoporin 98, poly A+ RNA export protein, plasma membrane ATPase 2, and serine/threonine protein kinase genes, complete cds.
GenBank	BT026406	0.0	BT026406.1 Arabidopsis thaliana At1g80730 mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F23A5	0.0	AC011713.2 Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006302787.1	1e-166	zinc finger protein 1
Swissprot	Q42485	1e-122	ZFP1_ARATH; Zinc finger protein 1
TrEMBL	R0IBY8	1e-164	R0IBY8_9BRAS; Uncharacterized protein
STRING	XP_006302787.1	1e-165	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11858	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-115	zinc-finger protein 1

Link Out ? help Back to Top
Phytozome	Carubv10020911m
Entrez Gene	17896130

Publications ? help Back to Top
Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098]