PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10020860m | ||||||||
Common Name | CARUB_v10020860mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 246aa MW: 26562.8 Da PI: 8.0688 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 107 | 1.1e-33 | 28 | 86 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++v YkeClkNhAa+lGgha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr+++e Carubv10020860m 28 MGVCYKECLKNHAANLGGHALDGCGEFMPSPTANsTDPSSLRCAACGCHRNFHRRDPSE 86 5789****************************99999******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-25 | 30 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.7E-27 | 30 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.506 | 32 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.6E-31 | 32 | 83 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-27 | 148 | 215 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.04E-17 | 148 | 215 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.7E-28 | 157 | 214 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDLSSETKQL LKNSLPIVAG ELTVTGEMGV CYKECLKNHA ANLGGHALDG CGEFMPSPTA 60 NSTDPSSLRC AACGCHRNFH RRDPSENLNF LTAPPISSPS GTESPPSRHV SSPVPCSYYT 120 SAPPHHVLLS LSSGFPGPSD QDPTVGRSDN SSRGAMRKRT RTKFTPEQKI KMRAFAEKAG 180 WKINGCDEKS VREFCNEVGI ERGVLKVWMH NNKYSLLNGK NREIEHGLCL NTHSCNNDGD 240 GSSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-19 | 158 | 215 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10020860m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC021046 | 0.0 | AC021046.2 Arabidopsis thaliana chromosome 1 BAC F24J1 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302745.1 | 0.0 | zinc-finger homeodomain protein 11 | ||||
Swissprot | Q9SEZ1 | 1e-165 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | R0IFT8 | 0.0 | R0IFT8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006302745.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-150 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10020860m |
Entrez Gene | 17894054 |
Publications ? help Back to Top | |||
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