PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10020777m
Common NameCARUB_v10020777mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 275aa    MW: 30275.9 Da    PI: 5.8997
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10020777mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.1e-184594255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +ykGVr ++ +g+Wv eIr p   +k++r++lg++ tae Aa+a++aa ++l+g
  Carubv10020777m 45 KYKGVRMRS-WGSWVTEIRAP---NKKTRIWLGSYSTAEAAARAYDAALLCLKG 94
                     8*****998.**********9...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.52E-1844104No hitNo description
SMARTSM003802.3E-3445108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3045104IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1945104IPR016177DNA-binding domain
PfamPF008479.6E-124594IPR001471AP2/ERF domain
PROSITE profilePS5103221.98345102IPR001471AP2/ERF domain
PRINTSPR003677.1E-94657IPR001471AP2/ERF domain
PRINTSPR003677.1E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MVKQEIKIQV TTSSRSSSLS HSSSPSSSSS SPLRHHQSSK NKIQKYKGVR MRSWGSWVTE  60
IRAPNKKTRI WLGSYSTAEA AARAYDAALL CLKGPKANLN FPHSTSPFLM NIDEKTLLSP  120
KSIQKVASQA ANSFSSEPFT PPSDEDDHDH DHNELHNHPS PSSSAASSPT DDGDLASHHH  180
DCDDRLHHHP SPSSSAASSP PHNDDDGDLV SLMESFVDFN EHVSLMDQSW YGFDQSEMFL  240
ANGSPFDYSP QLNSSKTTMD DLYDDADIQL WSFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14451031473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10020777m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302670.10.0ethylene-responsive transcription factor ERF013
SwissprotQ9SFE43e-65ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLR0IFN40.0R0IFN4_9BRAS; Uncharacterized protein
STRINGXP_006302670.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.14e-53ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]