PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10020723m

Common Name

CARUB_v10020723mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB

Protein Properties

Length: 298aa MW: 33284.2 Da PI: 7.2781

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10020723m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+ v+++G g W+t + + g++R++k+c++rw +yl Carubv10020723m 14 KGVWTQEEDQKLIAHVQRHGEGGWRTLPDKAGLKRCGKSCRLRWANYL 61 799*******************************************97 PP
2	Myb_DNA-binding	54.7	2.3e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE++ +++++ +G++ W++Iar+++ gRt++++k++w+++ Carubv10020723m 67 RGDFSQEEEDSMINLHAVHGNK-WSAIARRLP-GRTDNEIKNHWNTH 111 899*****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.212	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.70E-9	17	61	No hit	No description
PROSITE profile	PS51294	25.519	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-26	65	117	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-15	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	7.74E-11	70	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009625	Biological Process	response to insect
GO:0009506	Cellular Component	plasmodesma
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MVRTPCCRAE GLKKGVWTQE EDQKLIAHVQ RHGEGGWRTL PDKAGLKRCG KSCRLRWANY 60 LRPDIKRGDF SQEEEDSMIN LHAVHGNKWS AIARRLPGRT DNEIKNHWNT HIKKRLIKKG 120 IDPVTHKSLL DNLEEKSTVH QEKDDQKSKD NKSSRSSARF LNKVANRFGQ RVSQSVLSDI 180 IGSGGSLTSH ATPIISSSEC ERSTSSSSTP TSSDLLTNQS INVDATTPLS SSTCSDSSDL 240 FLYDDIFGDI EDTTRLISSR FLSNVVSHDG EEFLMLDGSC LENTSFMREL TMILQED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-28	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269\|PubMed:23580754, ECO:0000269\|PubMed:23943862}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10020723m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493533	1e-143	AB493533.1 Arabidopsis thaliana At1g74080 mRNA for hypothetical protein, partial cds, clone: RAAt1g74080.
GenBank	AF371983	1e-143	AF371983.2 Arabidopsis thaliana putative transcription factor MYB122 (MYB122) mRNA, complete cds.
GenBank	BT028931	1e-143	BT028931.1 Arabidopsis thaliana At1g74080 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006302618.1	0.0	transcription factor MYB122
Swissprot	Q9C9C8	1e-144	MY122_ARATH; Transcription factor MYB122
TrEMBL	R0GII9	0.0	R0GII9_9BRAS; Uncharacterized protein
STRING	XP_006302618.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74080.1	1e-132	myb domain protein 122

Link Out ? help Back to Top
Phytozome	Carubv10020723m
Entrez Gene	17895937

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Guo R, et al. Jasmonic acid and glucose synergistically modulate the accumulation of glucosinolates in Arabidopsis thaliana. J. Exp. Bot., 2013. 64(18): p. 5707-19 [PMID:24151308] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Frerigmann H,Gigolashvili T MYB34, MYB51, and MYB122 distinctly regulate indolic glucosinolate biosynthesis in Arabidopsis thaliana. Mol Plant, 2014. 7(5): p. 814-28 [PMID:24431192] Frerigmann H,Gigolashvili T Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] Peskan-Berghöfer T, et al. Sustained exposure to abscisic acid enhances the colonization potential of the mutualist fungus Piriformospora indica on Arabidopsis thaliana roots. New Phytol., 2015. 208(3): p. 873-86 [PMID:26075497] Frerigmann H,Glawischnig E,Gigolashvili T The role of MYB34, MYB51 and MYB122 in the regulation of camalexin biosynthesis in Arabidopsis thaliana. Front Plant Sci, 2015. 6: p. 654 [PMID:26379682] Frerigmann H, et al. Regulation of Pathogen-Triggered Tryptophan Metabolism in Arabidopsis thaliana by MYB Transcription Factors and Indole Glucosinolate Conversion Products. Mol Plant, 2016. 9(5): p. 682-695 [PMID:26802248] Stahl E, et al. Regulatory and Functional Aspects of Indolic Metabolism in Plant Systemic Acquired Resistance. Mol Plant, 2016. 9(5): p. 662-681 [PMID:26802249] Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors. Plant Physiol. Biochem., 2016. 102: p. 70-9 [PMID:26913794] Xu J, et al. Pathogen-Responsive MPK3 and MPK6 Reprogram the Biosynthesis of Indole Glucosinolates and Their Derivatives in Arabidopsis Immunity. Plant Cell, 2016. 28(5): p. 1144-62 [PMID:27081184] Miao H, et al. Glucose enhances indolic glucosinolate biosynthesis without reducing primary sulfur assimilation. Sci Rep, 2016. 6: p. 31854 [PMID:27549907]