PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019953m
Common NameCARUB_v10019953mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 635aa    MW: 72764 Da    PI: 4.8143
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019953mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016605624221
                      EETTTTEEESSHHHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                      +C  Cg+ F ++  L++H+ 
  Carubv10019953m 605 ECDRCGEEFESRTKLHKHLA 624
                      5*****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1105.5E-23586IPR001623DnaJ domain
SuperFamilySSF465659.55E-236113IPR001623DnaJ domain
SMARTSM002716.8E-221073IPR001623DnaJ domain
CDDcd062579.27E-161170IPR001623DnaJ domain
PROSITE profilePS5007619.3081181IPR001623DnaJ domain
PfamPF002262.8E-201278IPR001623DnaJ domain
PRINTSPR006251.4E-141331IPR001623DnaJ domain
PRINTSPR006251.4E-143146IPR001623DnaJ domain
PRINTSPR006251.4E-145373IPR001623DnaJ domain
PROSITE patternPS0063605877IPR018253DnaJ domain, conserved site
SuperFamilySSF576677.14E-15299354No hitNo description
SMARTSM004511.4E-7309343IPR003604Zinc finger, U1-type
PfamPF121713.5E-10311337IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82312336IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280314336IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723604633IPR007087Zinc finger, C2H2
SMARTSM003555.2604628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280606628IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MASSSRSEKR CHYEVLGISK ESSPDEIRSS YRRLALQRHP DKLMKAGGLS EAEATAQFQE  60
LVHAYEVLSD PKERAWYDSH RSQILFADHG SAGGSKSGGM PGGSVPDLFA FFSTTVYSGY  120
SDTGKGFYKV YYDVFNSVYL NEIKFARTLG LRMDSVREAP IMGNLESPYA QVTAFYNYWL  180
GFCTVMDFCW VDEYDVMAGP NRKSRRLMEE ENKKVRKKAK REYNDTVRGL AEFVKKRDKR  240
VIDMMVKKTA EMEKKKEEER ERKKKMEKER LERAMNYEEP DWAKTQDGEE EGAGFNVLDE  300
EDDDAERKNE QLYCIVCSKK FKSEKQWKNH EQSKKHKEKV AELRDSLTDY EEDIEEEEID  360
GSLDPPESVE QLHEKLQEGL NIDSEEKDVE EEVAGGADET DEEYFVAEED MEGSSESEAE  420
DDDDEMSLLK KMVHGQKNKR KNAVPMEEDE VEVGIESNTA EFSEFDNQKS TGRNKEEKEE  480
RNKQNAGKDM ADDTRKVQIP RDDDDPDENV NATDSASEAF EGSQKVEADS MEYDNRKATG  540
RRRRSKKGKD KNNHGGLTEK SSEADDTPYV NRDMEAQDYK KAPRSKKSTR GMKTKGTTKK  600
NSNNECDRCG EEFESRTKLH KHLADSGHAT VKSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bq0_A7e-12980268DNAJ
1xbl_A8e-12980268DNAJ
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212220KKVRKKAKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019953m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0205790.0AC020579.5 Arabidopsis thaliana chromosome 1 BAC F1O17 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300406.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLR0HTW80.0R0HTW8_9BRAS; Uncharacterized protein
STRINGXP_006300406.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.10.0DNAJ heat shock N-terminal domain-containing protein