PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019440m
Common NameCARUB_v10019440mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 310aa    MW: 33735.7 Da    PI: 7.4117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019440mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.39.9e-20651147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde+l + v+++G+++W++I++ ++ gR++k+c++rw + 
  Carubv10019440m  6 KGPWSQEEDEQLRRMVEKYGPRNWSAISKSIP-GRSGKSCRLRWCNQ 51
                     79******************************.***********985 PP
2Myb_DNA-binding51.72e-1660102347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++eEde +v a  ++G++ W+tIar ++ gRt++ +k++w++ 
  Carubv10019440m  60 PFSPEEDETIVTARSKFGNK-WATIARLLN-GRTDNAVKNHWNST 102
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.985156IPR017930Myb domain
SuperFamilySSF466891.55E-31399IPR009057Homeodomain-like
SMARTSM007173.2E-18554IPR001005SANT/Myb domain
PfamPF002492.3E-19651IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-26759IPR009057Homeodomain-like
CDDcd001671.37E-17850No hitNo description
SMARTSM007174.6E-1457105IPR001005SANT/Myb domain
PROSITE profilePS5129419.40458107IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2160106IPR009057Homeodomain-like
CDDcd001674.00E-1160103No hitNo description
PfamPF002491.5E-1360102IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP  60
FSPEEDETIV TARSKFGNKW ATIARLLNGR TDNAVKNHWN STLKRKCGGG GVATTTMTAD  120
EEEDDQDRPK KRRSVSFDSA FAPVDTGLYM SPESPIVSDS STIPSPSSPV AQLFKPMPIC  180
GGFAVVPQPL PVEMTSSSDD PPTSLSLSLP GAENTSSSHN HNSNNNNNNT LMFPRFESQM  240
KINVEERGVG GGGGGGEGRR GEFMTVVREM VKAEVRSYMT EMQRTSGNGG GGFVVGGYRD  300
CGIITPKVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-3951073105C-Myb DNA-Binding Domain
1msf_C5e-3951073105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00400DAPTransfer from AT3G50060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019440m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006293134.10.0transcription factor MYB77
SwissprotQ9SN121e-158MYB77_ARATH; Transcription factor MYB77
TrEMBLR0FT810.0R0FT81_9BRAS; Uncharacterized protein
STRINGXP_006293134.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135981527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.11e-128myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]