PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10019207m
Common NameCARUB_v10019207mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family RAV
Protein Properties Length: 682aa    MW: 75674.8 Da    PI: 7.8873
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10019207mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.21.7e-1259107155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+ +++g
  Carubv10019207m  59 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAHRFRG 107
                      6899**9788.8*********3.....5**********99************998 PP
2B3100.11.3e-31184290199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+k+ tpsdv+k++rlv+pk+ ae+h        ++++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD++ Fk+++
  Carubv10019207m 184 FEKTVTPSDVGKLNRLVIPKHQAEKHfplsggdeSNVSVKGMLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDSICFKRSN 277
                      99****************************8877666679***************************************************987 PP

                      SSEE..EEEEE-S CS
               B3  87 rsefelvvkvfrk 99 
                       ++ +l++++ +k
  Carubv10019207m 278 GQDHKLYIGWKSK 290
                      7999999999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-859107IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1659115IPR016177DNA-binding domain
CDDcd000181.46E-2559117No hitNo description
PROSITE profilePS5103220.08660115IPR001471AP2/ERF domain
SMARTSM003805.7E-2960121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-2060116IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.2E-37181298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-30182289IPR015300DNA-binding pseudobarrel domain
CDDcd100176.16E-27183278No hitNo description
PROSITE profilePS5086313.465184291IPR003340B3 DNA binding domain
SMARTSM010191.6E-26184291IPR003340B3 DNA binding domain
PfamPF023625.1E-28184290IPR003340B3 DNA binding domain
SuperFamilySSF559201.44E-74401679IPR000994Peptidase M24, structural domain
HamapMF_0197436.709435681IPR002467Peptidase M24A, methionine aminopeptidase, subfamily 1
TIGRFAMsTIGR005007.3E-76441679IPR002467Peptidase M24A, methionine aminopeptidase, subfamily 1
CDDcd010861.45E-116443679No hitNo description
Gene3DG3DSA:3.90.230.103.2E-86443679IPR000994Peptidase M24, structural domain
PfamPF005575.5E-49445671IPR000994Peptidase M24, structural domain
PRINTSPR005997.5E-15500513IPR001714Peptidase M24, methionine aminopeptidase
PRINTSPR005997.5E-15522538IPR001714Peptidase M24, methionine aminopeptidase
PRINTSPR005997.5E-15591603IPR001714Peptidase M24, methionine aminopeptidase
PRINTSPR005997.5E-15623635IPR001714Peptidase M24, methionine aminopeptidase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004177Molecular Functionaminopeptidase activity
GO:0008235Molecular Functionmetalloexopeptidase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MSSVDESSTT TDSIHTPVKI PAKKSPSPAG LLYRMGSGTS VVLDSENGLE AESRKLPSSR  60
FKGVVPQPNG RWGAQIYEKH QRVWLGTFNE EDEAARAYDV AAHRFRGRDA VTNFKEAKVD  120
DDEEVEFLND HSKSEIVDML RKHTYNEELE QRKRKRYGNG NKTTGFGSVT VAVITGFKTS  180
GLLFEKTVTP SDVGKLNRLV IPKHQAEKHF PLSGGDESNV SVKGMLLNFE DVNGKVWRFR  240
YSYWNSSQSY VLTKGWSRFV KEKRLCAGDS ICFKRSNGQD HKLYIGWKSK SGSGSGSDQD  300
TGRIVRLFGV DICFSDTAGL VVKEEAEMSM SLKCNNHKKQ RKIIPSRSLF NGSKLTPSKY  360
FAGAPTNFSS FPLSGKKKSY SLRIKRIQQL QNSLEDRINP PLVCGRVTPR LCVPDHILKP  420
SYVESSEVPR ISSEIQIPDS IGIVKMKKAC ELAARVLDYA GTLVRPFVTT DEIDKAVHQM  480
VIESGAYPSP LGYGGFPKSV CTSVNECMFH GIPDSRPLQN GDIINIDVAV YLDGYHGDTS  540
KTFLCGDVDE SLIQLVKVTE ECLEKGISVC KDGANFKQIG KIISEHAAKY GYNMERFIGH  600
GVGTVLHSEP LIYLHSNYDY ELEYMIEGQT FTLEPILTIG TTEFVTWPDK WTIVTADGGP  660
AAQFEHTILI TTTGSEILTI S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4fuk_A6e-7840167911305Methionine aminopeptidase
4fuk_B6e-7840167911305Methionine aminopeptidase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRemoves the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). {ECO:0000255|HAMAP-Rule:MF_03174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10019207m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0248750.0BT024875.1 Arabidopsis thaliana At3g25740 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023638297.10.0AP2/ERF and B3 domain-containing transcription factor ARF14
SwissprotQ9FV510.0MAP1C_ARATH; Methionine aminopeptidase 1C, chloroplastic/mitochondrial
TrEMBLR0H8Z40.0R0H8Z4_9BRAS; Methionine aminopeptidase
STRINGXP_006292936.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM439133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-168ethylene response DNA binding factor 3
Publications ? help Back to Top
  1. Giglione C,Serero A,Pierre M,Boisson B,Meinnel T
    Identification of eukaryotic peptide deformylases reveals universality of N-terminal protein processing mechanisms.
    EMBO J., 2000. 19(21): p. 5916-29
    [PMID:11060042]
  2. Sokolenko A, et al.
    The gene complement for proteolysis in the cyanobacterium Synechocystis sp. PCC 6803 and Arabidopsis thaliana chloroplasts.
    Curr. Genet., 2002. 41(5): p. 291-310
    [PMID:12185496]
  3. Ross S,Giglione C,Pierre M,Espagne C,Meinnel T
    Functional and developmental impact of cytosolic protein N-terminal methionine excision in Arabidopsis.
    Plant Physiol., 2005. 137(2): p. 623-37
    [PMID:15681659]