PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10018774m
Common NameCARUB_v10018774mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 188aa    MW: 20087.8 Da    PI: 9.3933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10018774mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0014365123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+k Fs+   L  H  +H
  Carubv10018774m 43 FRCKTCKKEFSSFQALGGHRASH 65
                     89**********99999998887 PP
2zf-C2H215.16.9e-05100122123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+Cg  F+    L  H+r+H
  Carubv10018774m 100 HVCPICGLNFPMGQALGGHMRKH 122
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.43E-84165No hitNo description
PfamPF139122.5E-114266IPR007087Zinc finger, C2H2
SMARTSM003550.194365IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.3284365IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SuperFamilySSF576677.43E-895122No hitNo description
PROSITE profilePS5015710.741100127IPR007087Zinc finger, C2H2
PfamPF139124.1E-10100123IPR007087Zinc finger, C2H2
SMARTSM003550.14100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MIANREECID PSTAVDKAAK CLMLLTRVGG DDGVGGGGEK RVFRCKTCKK EFSSFQALGG  60
HRASHNKLAN NGDYTTSSLT GSPKKKTPSK TTTTSTTTIH VCPICGLNFP MGQALGGHMR  120
KHRNEKEKAS SNELVTRSFL PENATFTTMT TLNKSSSGKR VACLDLHDLA AVETGVNTDL  180
ELGRSMY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10018774m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292540.11e-137zinc finger protein ZAT8
SwissprotQ9LX852e-64ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLR0HNF71e-135R0HNF7_9BRAS; Uncharacterized protein
STRINGXP_006292540.11e-136(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46070.18e-60C2H2 family protein