PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10018619m | ||||||||
Common Name | CARUB_v10018619mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 24417.7 Da PI: 8.5794 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.8 | 3.1e-37 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+ dCv+apyf +e+ p++fa++hk+FGasnv+k+l ++p ++r++++ +++y+Aear++dPvyG+v+++++lqqq++ l+a+ Carubv10018619m 11 PCGACKFLRRKCVFDCVFAPYFSSEEsPARFAAIHKVFGASNVSKILLHVPIQDRHEVVVTMAYQAEARLHDPVYGCVSHVFALQQQVAFLQAQ 104 7*********************997769****************************************************************** PP DUF260 94 lallkee 100 l +lk++ Carubv10018619m 105 LMQLKAN 111 9998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.451 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-36 | 11 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MTSNGTGTGS PCGACKFLRR KCVFDCVFAP YFSSEESPAR FAAIHKVFGA SNVSKILLHV 60 PIQDRHEVVV TMAYQAEARL HDPVYGCVSH VFALQQQVAF LQAQLMQLKA NLAHQTIFTV 120 AGDLSNRSEM TWQRTSGYTI PYMPYSHENP NKPVSPVSST ESLEYSHTSS QVTTGVQDIQ 180 TGRRFGFHQE GYPNKKRSVS YCNTDLGELQ ALALRMMRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-36 | 7 | 105 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-36 | 7 | 105 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10018619m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292407.1 | 1e-166 | LOB domain-containing protein 16 | ||||
Swissprot | Q9SLB7 | 4e-99 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | R0HJB8 | 1e-165 | R0HJB8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006292407.1 | 1e-166 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-86 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10018619m |
Entrez Gene | 17885527 |