PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10018421m | ||||||||
Common Name | CARUB_v10018421mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WOX | ||||||||
Protein Properties | Length: 274aa MW: 31238.6 Da PI: 6.7135 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69 | 5.7e-22 | 60 | 119 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+++Leel+++ +r+p++e+++++A+kl +++ ++V++WFqN++a+e++ Carubv10018421m 60 SRWNPTPEQITTLEELYKSgTRTPTTEQIQKIASKLrkygRIEGKNVFYWFQNHKARERQ 119 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 116.6 | 1.2e-37 | 58 | 121 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 a++RW+PtpeQi+ LeelyksG+rtP++e+iq+i+++L++yG+ie+kNVfyWFQN+kaRerqk+ Carubv10018421m 58 ATSRWNPTPEQITTLEELYKSGTRTPTTEQIQKIASKLRKYGRIEGKNVFYWFQNHKARERQKR 121 579***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.612 | 55 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.9E-6 | 57 | 124 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-9 | 60 | 119 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.3E-19 | 60 | 119 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-13 | 60 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.17E-5 | 61 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048314 | Biological Process | embryo sac morphogenesis | ||||
GO:0048446 | Biological Process | petal morphogenesis | ||||
GO:0048482 | Biological Process | plant ovule morphogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0048353 | Cellular Component | primary endosperm nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MGYVSDNNLV NYMPLSTTTQ SHLLLTHCDI NGDDQHQLIP ASSGEHDEGK SNVTAAVATS 60 RWNPTPEQIT TLEELYKSGT RTPTTEQIQK IASKLRKYGR IEGKNVFYWF QNHKARERQK 120 RRRREGVAIN ISGREPHQDV KDSSSGGYRV DRTKSCLSFP HSDAQPQHEL LVPLSYNKDN 180 NGNNEDDGTT TEVSERASEG GKDIITWRNL VTSSITDQDE PGREVETREI RTLNLFPVLD 240 QNQEKTSRFK EKMMNQVCCC NYCFYYEFLP LKN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a central role in ovule patterning by regulating cell proliferation of the maternal integuments and differentiation of the maegaspore mother cell (MCC). Involved in AGAMOUS (AG) repression in leaves. {ECO:0000269|PubMed:15659481}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10018421m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254604 | 0.0 | AC254604.1 Capsella rubella clone CAP23-D18, complete sequence. | |||
GenBank | AC254607 | 0.0 | AC254607.1 Capsella rubella clone CAP08-M18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292215.1 | 0.0 | WUSCHEL-related homeobox 6 | ||||
Swissprot | Q9ZVF5 | 1e-120 | WOX6_ARATH; WUSCHEL-related homeobox 6 | ||||
TrEMBL | R0HMG9 | 0.0 | R0HMG9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006292215.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13369 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01500.1 | 1e-103 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10018421m |
Entrez Gene | 17885314 |