PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10018376m | ||||||||
Common Name | CARUB_v10018376mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | LBD | ||||||||
Protein Properties | Length: 365aa MW: 41138.7 Da PI: 5.7823 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.9 | 1.4e-37 | 36 | 136 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rr+Ca+dC+lapyfpaeqpk f+nvh+lFG++ ++k+l++l+e+++++am+s+++++ +r r Pv+G++gv ++lq + +++el Carubv10018376m 36 ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILERLDETQKPEAMKSIIFQSYVRDRSPVHGCLGVTQQLQYMIWLAEEEL 129 7********************************************************************************************* PP DUF260 95 allkeel 101 ++++++l Carubv10018376m 130 KAVNSQL 136 *999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.973 | 35 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-34 | 36 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MSHVKHIHKG SLERFLDLLL IALFVLMTLK GGTSGACAAC KYQRRRCAAD CPLAPYFPAE 60 QPKLFQNVHR LFGVRSIVKI LERLDETQKP EAMKSIIFQS YVRDRSPVHG CLGVTQQLQY 120 MIWLAEEELK AVNSQLQLYR SQQHQHNGPT QTPHDHHNQM IHDLGLDNKH QEDVTSQLDL 180 GMGLNLNNNQ SNVVAPFFSP LPVSETQQPQ MSYTYSCSEV NNNVYSPPAY NTDSGKEILT 240 NNNNAWGVQN RYDMYNDNNG GGGFSNQNEN VHEMKSNNGV VGIQSQLVNL QMASNHRQQE 300 EEDAHEYDEI HQFLQIIDDR QSFADSKEAY ASSSGETLKE HNIDEIGENE LRSAATCFSL 360 TSVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-23 | 32 | 139 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-23 | 32 | 139 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10018376m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292170.1 | 0.0 | LOB domain-containing protein 27 | ||||
Swissprot | Q9STS6 | 1e-165 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | R0HMD7 | 0.0 | R0HMD7_9BRAS; Uncharacterized protein | ||||
STRING | XP_006292170.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-159 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10018376m |
Entrez Gene | 17886744 |
Publications ? help Back to Top | |||
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