PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10018142m

Common Name

CARUB_v10018142mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C2H2

Protein Properties

Length: 167aa MW: 18276.1 Da PI: 9.1556

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10018142m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0016	35	57	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k Fs+ L H +H Carubv10018142m 35 YRCKTCLKEFSSFQALGGHRASH 57 9***********99999998887 PP
2	zf-C2H2	13.1	0.00029	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H Carubv10018142m 83 HPCPICGVDFPMGQALGGHMRRH 105 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.05E-7	33	105	No hit	No description
Pfam	PF13912	1.4E-11	34	58	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.182	35	57	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.56	35	57	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	37	57	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.7E-10	83	106	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.22	83	105	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.616	83	110	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MVARSEIVED TVVECLMLLP RVGEYGGGGG EKRVYRCKTC LKEFSSFQAL GGHRASHKRL 60 TNSDDSSLLE SLSSHKKTKV TSHPCPICGV DFPMGQALGG HMRRHRNEKA SVKTLVTRSF 120 LPEATTTVTT LKKCSSGKRV ACLDNLELDS IESLVNWKLE LNLRIG*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10018142m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18201973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291954.1	1e-119	zinc finger protein ZAT8
Swissprot	Q9LX85	1e-85	ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBL	R0FQL6	1e-118	R0FQL6_9BRAS; Uncharacterized protein
STRING	XP_006291954.1	1e-119	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2028	18	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46080.1	1e-74	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Carubv10018142m
Entrez Gene	17886255