PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017988m
Common NameCARUB_v10017988mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 223aa    MW: 24117.5 Da    PI: 7.3105
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017988mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-0589111123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ CgksF++   L  H  +H
  Carubv10017988m  89 YKCSVCGKSFPSYQALGGHKTSH 111
                      9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-987111No hitNo description
Gene3DG3DSA:3.30.160.602.1E-487111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002289111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78389116IPR007087Zinc finger, C2H2
PfamPF139121.3E-1489113IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-9150177No hitNo description
PfamPF139122.9E-12154179IPR007087Zinc finger, C2H2
SMARTSM003551.2155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871155177IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MALDTLNSPT STTTTAPPPP PPFLRCLDQT EPENLESWTK RKRTKRHRID QPNPPSEEEY  60
LALCLLMLAR GSSDHHHSPP PPSDHQKDYK CSVCGKSFPS YQALGGHKTS HRKPVSNNNN  120
NNNNDDGENT NGSVTNNGNI NISSNGLVGQ SGKTHNCSIC FKSFPSGQAL GGHKRCHYDG  180
GVGNTSNMIT SHGFDLNLPA DQVTDETIGK SQLSDQETKS VL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017988m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329784e-66AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4.
GenBankBT0293774e-66BT029377.1 Arabidopsis thaliana At3g49930 mRNA, complete cds.
GenBankCP0026864e-66CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291812.11e-164zinc finger protein AZF1
SwissprotQ9SSW11e-67AZF1_ARATH; Zinc finger protein AZF1
TrEMBLR0HHN91e-163R0HHN9_9BRAS; Uncharacterized protein
STRINGXP_006291812.11e-164(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.19e-89C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]