PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10017859m | ||||||||
Common Name | CARUB_v10017859mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 262aa MW: 29836.8 Da PI: 6.0368 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86.1 | 3.2e-27 | 131 | 191 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD y+WrKYGqKe+ gs+fpr+YYrCt++ +Cp+kk+v+r +edp ++ +tY+++H+++ Carubv10017859m 131 DDNYTWRKYGQKEILGSRFPRAYYRCTHQklyKCPAKKQVQRLDEDPYTFRVTYRSSHTCH 191 8****************************9999*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.8E-27 | 128 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.18E-24 | 129 | 192 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.0E-34 | 130 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-24 | 131 | 191 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.162 | 131 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MEEIMTMIFN GINLVKELEF SLSSQELPES DLSNSLGSIS TLFGDANERL KSQLAWKNSL 60 AQLEPVRMMD MMMETEPALT QQDHWIRYPV MQTVKGNDDT SRPRHRPRKK DIGGEETVLM 120 AAMGRIEIPP DDNYTWRKYG QKEILGSRFP RAYYRCTHQK LYKCPAKKQV QRLDEDPYTF 180 RVTYRSSHTC HFFATSLTSS AHVHATTPAA NVPAVVNLAE TMIGNMDSVV PFGELPYFNH 240 HCLVPGDDAN CEDTWNYDMS S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-20 | 131 | 190 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10017859m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291695.1 | 0.0 | WRKY transcription factor 55 | ||||
Swissprot | Q9SHB5 | 6e-71 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | R0HL29 | 0.0 | R0HL29_9BRAS; Uncharacterized protein | ||||
STRING | XP_006291695.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3641 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 2e-68 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10017859m |
Entrez Gene | 17887057 |
Publications ? help Back to Top | |||
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