PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017799m
Common NameCARUB_v10017799mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 280aa    MW: 30485.1 Da    PI: 4.6186
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017799mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.7e-1878127255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a ++++g
  Carubv10017799m  78 SYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVASLAIKG 127
                      6*****998.**********843...6********************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.85378135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3078136IPR001471AP2/ERF domain
SMARTSM003802.0E-3478141IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2078135IPR016177DNA-binding domain
PfamPF008476.3E-1278127IPR001471AP2/ERF domain
PRINTSPR003671.1E-107990IPR001471AP2/ERF domain
CDDcd000181.07E-3179137No hitNo description
PRINTSPR003671.1E-10101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEKQINIESS ETHHHHDNNA SVITTSNVAA ASSSSSAVTS SSSESWTTSS KRSLVQDNND  60
AGGKRRKSND DHKNPTTSYR GVRMRSWGKW VSEIREPRKK SRIWLGTFPT AEMAARAHDV  120
ASLAIKGNSG YLNFPELSGL LPRPVSSSPK DIQAAATKAA ETTTWQELAT DEKLAEPEAD  180
ELSHSSELLM STTTTTTTAA ADQSSTSSSF VFSSDTSETC STDKESSEET LFDLPDLFTD  240
GLMNGNDAFC LCNGTSTWQL YGEDVGFLRF EEPFIWQND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-16781351472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00414DAPTransfer from AT3G60490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017799m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386461e-114AL138646.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T8B10.
GenBankAY5608481e-114AY560848.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At3g60490) mRNA, complete cds.
GenBankBT0294581e-114BT029458.1 Arabidopsis thaliana At3g60490 mRNA, complete cds.
GenBankCP0026861e-114CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291643.10.0ethylene-responsive transcription factor ERF035
SwissprotQ9M2101e-109ERF35_ARATH; Ethylene-responsive transcription factor ERF035
TrEMBLR0FQV80.0R0FQV8_9BRAS; Uncharacterized protein
STRINGXP_006291643.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.14e-95ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]