PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017588m
Common NameCARUB_v10017588mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 340aa    MW: 37584.5 Da    PI: 9.8283
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017588mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.27e-19185239256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq  +Lee F+++++++ +++  LAk+l+L++rqV vWFqNrRa+ k
  Carubv10017588m 185 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLQTRQVEVWFQNRRARTK 239
                      788899***********************************************98 PP
2HD-ZIP_I/II120.77.7e-39185274191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rlskeq+ +LEe+F+e+++L+p++K++la++L+lq+rqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+eLr +l
  Carubv10017588m 185 RKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLQTRQVEVWFQNRRARTKLKQTEVDCEYLRRRCENLTEENRRLQKEVSELR-AL 274
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.1E-3625142IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466894.28E-19166242IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-19169235IPR009057Homeodomain-like
PROSITE profilePS5007117.394181241IPR001356Homeobox domain
SMARTSM003896.9E-16183245IPR001356Homeobox domain
CDDcd000863.48E-15185242No hitNo description
PfamPF000462.9E-16185239IPR001356Homeobox domain
PROSITE patternPS000270216239IPR017970Homeobox, conserved site
PfamPF021834.6E-10241275IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.6E-24241284IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
KNLRTQRQIF FFLLSVFGLG KTKKMGERDD GLGLSLSLSL GFTPKEPSSR FNPMPMASYS  60
SSSHMHMQQQ SNYSHPHKIQ NSWINMFQSS ERNSDMRSFL RGIDVNRAPS TVVVDVEDDA  120
AGVSSPNSTV SSVVSGKRSE RELMAAAAAA GGGRAEDNEM ERASCSLGGG SDDEDGSGNG  180
DDGSRKKLRL SKEQALVLEE TFKEHSTLNP KQKMALAKQL NLQTRQVEVW FQNRRARTKL  240
KQTEVDCEYL RRRCENLTEE NRRLQKEVSE LRALKLSPHL YMHMKPPTTL TMCPSCERVA  300
VTSSSSSVAP PVMTSSSPMG QMSPWAAIPL RQRPAAGSH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183189SRKKLRL
2233241RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017588m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0995650.0AY099565.1 Arabidopsis thaliana homeobox-leucine zipper protein HAT3 (At3g60390) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291451.20.0homeobox-leucine zipper protein HAT3
SwissprotP466020.0HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLR0H4X80.0R0H4X8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_006291451.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-132homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]