PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10017565m
Common NameCARUB_v10017565mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 346aa    MW: 37890.5 Da    PI: 4.6409
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10017565mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35e-15129177153
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                      ++  GVr++k +g+W+AeIr+p     + +r +lg++ t e+Aa a+ a ++++
  Carubv10017565m 129 TKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYETLEQAANAYAAKKLEF 177
                      5789*****9.**********72....36******************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-9129176IPR001471AP2/ERF domain
CDDcd000189.85E-19129175No hitNo description
SMARTSM003801.1E-13130192IPR001471AP2/ERF domain
PROSITE profilePS5103218.176130187IPR001471AP2/ERF domain
PRINTSPR003671.7E-6131142IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-14132179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-19133182IPR001471AP2/ERF domain
PRINTSPR003671.7E-6153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAERKKRSSI QTNKPYKKPM KKKTLQLNHL PGLSEDMKTM KKIRFVVNDP YATDYSSSEE  60
DERVERRKRY VCEIDLPFAQ AATQAESESS FCQESNTTNG VTKTKTSACS KKVVSSKPSG  120
VVGRSSIVTK PVGVRQRKWG KWAAEIRHPI TKTRTWLGTY ETLEQAANAY AAKKLEFDSL  180
AAATSAASSN VSENALSDSN ESGSLISASG SNVEAVSSIG LDKMVLDSTI DQEAGESKKR  240
SFGFDFADLQ IPEMGCFIDE SLIPNACELD FLLTEENNQL LDDYCGIDDL DIIGLECDGP  300
SELPDYDFSD VDIDLGLIGT TMDKYAFMDH IATTTTTTPL NIACP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10017565m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291428.10.0ethylene-responsive transcription factor ERF119
SwissprotQ9LUA21e-180EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLR0FQB40.0R0FQB4_9BRAS; Uncharacterized protein
STRINGXP_006291428.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-145ERF family protein