PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10016477m | ||||||||
Common Name | CARUB_v10016477mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 147aa MW: 17054.8 Da PI: 8.586 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ F ++ + H+++H Carubv10016477m 88 YTCPKCTGKFDTSQKFAAHMSSH 110 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.720 | 2.8E-4 | 22 | 112 | IPR016040 | NAD(P)-binding domain |
PROSITE profile | PS50157 | 8.891 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
CEILSPEPLR VIFPYQYYAY SQQADMFSAS STHNHDQNNV QVGRPLKKIS NPTMLFEKST 60 DERSCEEIKK SDDDGRTHNL PYEKYGPYTC PKCTGKFDTS QKFAAHMSSH YKTETNNERA 120 ERFRERNKKK YGKRNLEDHG ESQKST* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10016477m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010467668.2 | 3e-78 | PREDICTED: uncharacterized protein LOC104747690 | ||||
TrEMBL | R0I539 | 1e-106 | R0I539_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006300237.1 | 1e-107 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1924 | 19 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18490.1 | 2e-53 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10016477m |
Entrez Gene | 17893953 |