PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10016033m
Common NameCARUB_v10016033mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 396aa    MW: 42674.1 Da    PI: 7.2331
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10016033mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047177199123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++F++   L  H  +H
  Carubv10016033m 177 YQCKTCDRTFPSFQALGGHRASH 199
                      9***********99999998887 PP
2zf-C2H2130.00032257279123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg  F++   L  H+r+H
  Carubv10016033m 257 HECGICGAEFTSGQALGGHMRRH 279
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.9E-8176199No hitNo description
PfamPF139122.3E-12176201IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471177204IPR007087Zinc finger, C2H2
SMARTSM003550.028177199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280179199IPR007087Zinc finger, C2H2
SuperFamilySSF576675.9E-8252279No hitNo description
Gene3DG3DSA:3.30.160.608.1E-4255281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-11256281IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93257281IPR007087Zinc finger, C2H2
SMARTSM003550.047257279IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280259279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEAAAEAVSA AKEQSLILKG KRTKRQRPQS PIPFSIIPPM SSQEPDAEEE STSLVSKEQN  60
LNDESNNNNN NIKNDNNTLI NGVTSSSSAS SSSNNNATLK ATVDEEDQDM ANCLILLAQG  120
HSLPQHQPQP HLQQQTRQLM ISYQESGNNN NAYRSSSRRF LETSPSNGGG RAGYYVYQCK  180
TCDRTFPSFQ ALGGHRASHK KPKAATGLHS SHDLKKSIYD DPVSLHLNNV VTTAPNSNSN  240
HRSLVVYGKA NNSNKVHECG ICGAEFTSGQ ALGGHMRRHR GAVVATAAAS TATLAVAATP  300
VTANTALSLS PMSFDKMSEG PVQVPVKRAR SAVVSLDLDL NLPAPEDENR VNGGLSLASK  360
QEQEHEHEQT QQNQQREEQK SIVLSSAPTL VDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10016033m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0115600.0AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBankATAC0134280.0AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299831.10.0zinc finger protein ZAT5
TrEMBLR0HSD70.0R0HSD7_9BRAS; Uncharacterized protein
STRINGXP_006299831.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-136C2H2 family protein