PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10015887m | ||||||||
Common Name | CARUB_v10015887mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GRF | ||||||||
Protein Properties | Length: 251aa MW: 28943.5 Da PI: 8.323 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 73.1 | 3.2e-23 | 83 | 124 | 1 | 42 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrks 42 daepgrCrRtDGKkWRCs+++++++k+CErH+hrg++rs++s Carubv10015887m 83 DAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSS 124 79*************************************987 PP | |||||||
2 | QLQ | 59.8 | 7.6e-21 | 6 | 41 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT +Q+++L++Q+l++KyLaan+PvPp+Ll+ i++ Carubv10015887m 6 PFTESQWEELENQALVFKYLAANVPVPPHLLFLIKR 41 8******************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.7E-14 | 5 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.6E-15 | 6 | 39 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.49 | 6 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.775 | 83 | 127 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.4E-19 | 84 | 124 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MATRIPFTES QWEELENQAL VFKYLAANVP VPPHLLFLIK RPFLFSSPSS NSSSPSPSSF 60 FSPTLSPHFG WNVYEMGMGR KIDAEPGRCR RTDGKKWRCS KEAYPDSKYC ERHMHRGKNR 120 SSSSRKTLPL TPPHQFTPNL FLESSLSSSR VSRRRSGYMD DFFSIEPSGS IRSSVMEDDE 180 GINREKQPDR HCFILGTDLG TRERPLMLDE DKLKQRDDEE DEEEQRSKRL YRFLDEWPSS 240 KSSVSTSLFI * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00263 | DAP | Transfer from AT2G06200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10015887m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY060586 | 1e-136 | AY060586.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds. | |||
GenBank | AY125572 | 1e-136 | AY125572.1 Arabidopsis thaliana At2g06200/F5K7.4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006299696.1 | 0.0 | growth-regulating factor 6 | ||||
Swissprot | Q9ZQ12 | 1e-119 | GRF6_ARATH; Growth-regulating factor 6 | ||||
TrEMBL | R0HS36 | 0.0 | R0HS36_9BRAS; Uncharacterized protein | ||||
STRING | XP_006299696.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14101 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G06200.1 | 1e-102 | growth-regulating factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10015887m |
Entrez Gene | 17893575 |
Publications ? help Back to Top | |||
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