PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015875m
Common NameCARUB_v10015875mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 302aa    MW: 35113.6 Da    PI: 8.3597
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015875mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05247269123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp+C+ +F ++  +  H+++H
  Carubv10015875m 247 YTCPKCNGVFDTSQKFAAHMSSH 269
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0096247269IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224247274IPR007087Zinc finger, C2H2
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSFPNNFNFH GDNTNNHCSF PNQMNPNSRM VRSMFTTSDH TNHGDLYSPS PFTSFQNSHV  60
SSSSFELQNS HVSSSSFGFH NSHVKNHMMS DNYFSVKNHS QLTQISFTQT TTNRYTAIIP  120
TSALDTIQYG IERDQRAMHS KTDIWNPIFP PPHIFDKHRG ILNPEPFDFI FPRQDSAHHL  180
ERSFMSSTHN HDQHILQDGR FLKKIWKPSN LYEKTIKHNE TEEKDNNDDD PYDGRTHSLP  240
YEKYGPYTCP KCNGVFDTSQ KFAAHMSSHY KTETKEEREQ RLRAKNKRKY CKLTQESHGK  300
S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00264DAPTransfer from AT2G15740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015875m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296780.10.0uncharacterized protein LOC17892574
TrEMBLR0I0060.0R0I006_9BRAS; Uncharacterized protein
STRINGXP_006296780.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G15740.11e-114C2H2-like zinc finger protein