PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015484m
Common NameCARUB_v10015484mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 323aa    MW: 35900.7 Da    PI: 4.8893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015484mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-102472871055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Carubv10015484m 247 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 287
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14238303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-12242296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-11246291No hitNo description
PfamPF000109.6E-8247287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEAMGEWSTG LGGMYTEEAD FMNQLLASYE QPCGGSSSET TATLSAYHHG QGSHWPSSFC  60
FSQESSSYSG YCTVVPQGED DNNRMEDATI NTNVYLVGEE TSECDVAEYY GKPLDTVQEN  120
HGHHSMVQPE DSLTTTTDEK LSSKKRMRPI STDKNKRANK ARRSQKGVEM SGDNENSGEE  180
EYTEKARGKR KAKLKLPKTC CSDDDESNGI DTSFSKEDGE DSKALNLNGK TRASRGAATD  240
PQSLYARKRR ERINERLRIL QNLVPNGTKV DISTMLEEAV QYVKFLQLQI KLLSSDDLWM  300
YAPIAYNGMD IGLDLKLNAL TR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015484m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775840.0AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene).
GenBankDQ4464970.0DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299327.10.0transcription factor bHLH84 isoform X2
SwissprotQ7XHI90.0BH084_ARATH; Transcription factor bHLH84
TrEMBLR0I2S20.0R0I2S2_9BRAS; Uncharacterized protein
STRINGXP_006299327.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-156bHLH family protein