PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015391m
Common NameCARUB_v10015391mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 345aa    MW: 39266.2 Da    PI: 9.0397
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015391mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053294316123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k+Fs+   L  H+  H
  Carubv10015391m 294 HRCGLCDKVFSTYQALGGHQTFH 316
                      79*************99999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.516593IPR007087Zinc finger, C2H2
SMARTSM003550.626588IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806788IPR007087Zinc finger, C2H2
SuperFamilySSF576673.03E-5292318No hitNo description
PfamPF139122.2E-7294317IPR007087Zinc finger, C2H2
SMARTSM003550.31294316IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078294321IPR007087Zinc finger, C2H2
PROSITE patternPS000280296316IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEDHQEFEKS IFELRLNKLS NRTKKIGVGE SMNHYEKLYG LRENPKKTQK SLLVVHRRKN  60
KKSLIRCREC GKGFLYEKCL LTHRQVTHSE ESMRTSLLCS FSVVQRRKRS KRVSRYKTKS  120
TRFSVSSSSF TVFPVSVDDG ELLEVAESLI LLSMSGGKFL NGLERFDKAL DSSNQREYGD  180
GFLRNDQRHV AEALDSNSEV DLSKDGDFEE DGVLSNEQKK LVGVSIESDG TWKKLSDCLA  240
DKKASEDDES GQQKQVRAGM LREETDNGEK LVGQETAFED SHSGKKGFEM NNEHRCGLCD  300
KVFSTYQALG GHQTFHRIRN KSKSQTKRCR KEPVEVGELR LMGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015391m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299242.20.0uncharacterized protein LOC17893625
TrEMBLR0I2K40.0R0I2K4_9BRAS; Uncharacterized protein
STRINGXP_006299242.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.11e-21C2H2 family protein