PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015344m
Common NameCARUB_v10015344mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 298aa    MW: 34358.5 Da    PI: 5.8561
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015344mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00018118139223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C  Cgk F + ++L  H+r+H
  Carubv10015344m 118 RCCLCGKEFQTMHSLFGHMRRH 139
                      7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.67E-54872No hitNo description
SMARTSM003551.25072IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2245077IPR007087Zinc finger, C2H2
PfamPF139120.00575272IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SuperFamilySSF576671.67E-5112139No hitNo description
SMARTSM003550.091117139IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806117139IPR007087Zinc finger, C2H2
PfamPF139123.8E-4118141IPR007087Zinc finger, C2H2
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKRTRDAYEE DESFSSESEE FHQKLKVKFE EERSEDEDDE SPQQLPLRKH FCVICKKQFS  60
SGKAYGGHVR IHSTEYNNKG KMKKKLKMKK KKRKIGLVKK DKEKEIDLIA ADMEGKIRCC  120
LCGKEFQTMH SLFGHMRRHP DRSWKGVRPP PPQEKFNLSY LGDDDEEDDD GEDDVDEDDS  180
DVRSRSTMMS DVTQDVQEAA CILMMISYTS SNCWDGIKKD MDSPKSEARS SSCYKGKDKV  240
LGDGGMNDDK KGLIVDMKIE MEIEVKVNNP RDDPKRSLGF DLNQPPHHED HPYSSWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18593LKMKKKKRK
28893KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10015344m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545800.0AC254580.1 Capsella rubella clone JGIBSIA-5G22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299197.10.0uncharacterized protein LOC17893501
TrEMBLR0I2G70.0R0I2G7_9BRAS; Uncharacterized protein
STRINGXP_006299197.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-108C2H2 family protein