PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10015240m | ||||||||
Common Name | CARUB_v10015240mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 106aa MW: 11901.7 Da PI: 10.3167 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49 | 1.1e-15 | 23 | 102 | 12 | 97 |
HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ l +p f+ +h g +e++ ++l++ s +W+vk+ ++++ lt+GWk+F+ +++L++gD+vvF++dg+ f +v+ f Carubv10015240m 23 HTH-LNIPMAFFLRHiqGTTNEGNGVVKLRSfVSDITWQVKM--DGRR----LTQGWKKFATSHDLRVGDIVVFRHDGDLLF--HVTCF 102 444.99*****999999666677789*****9999*******..9998....***********************8875444..66655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.4E-20 | 6 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-19 | 7 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.632 | 11 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.05E-15 | 12 | 102 | No hit | No description |
SMART | SM01019 | 1.9E-17 | 14 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-11 | 25 | 95 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MENVAASSPV NPHFFRPLLP GFHTHLNIPM AFFLRHIQGT TNEGNGVVKL RSFVSDITWQ 60 VKMDGRRLTQ GWKKFATSHD LRVGDIVVFR HDGDLLFHVT CFGPS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10015240m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641259.1 | 2e-71 | B3 domain-containing protein REM14 | ||||
Swissprot | P0DH85 | 9e-40 | REM10_ARATH; B3 domain-containing protein REM10 | ||||
Swissprot | Q9SB80 | 8e-40 | REM5_ARATH; B3 domain-containing protein REM5 | ||||
TrEMBL | R0HQH8 | 6e-72 | R0HQH8_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.2520s0001.1.p | 1e-72 | (Capsella grandiflora) | ||||
STRING | XP_006299101.1 | 1e-72 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31640.1 | 3e-42 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10015240m |
Entrez Gene | 17892393 |
Publications ? help Back to Top | |||
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