PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014506m
Common NameCARUB_v10014506mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 242aa    MW: 26689.2 Da    PI: 4.328
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014506mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1756106155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr ++ +g+Wv+eIr p++   ++r++lg+f ta++Aa+a++ a++ ++g
  Carubv10014506m  56 PVYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTFATADMAARAHDVAALTIKG 106
                      68*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-1256106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3157115IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2157115IPR016177DNA-binding domain
SMARTSM003802.4E-3557120IPR001471AP2/ERF domain
PROSITE profilePS5103222.58957114IPR001471AP2/ERF domain
PRINTSPR003672.1E-105869IPR001471AP2/ERF domain
CDDcd000184.54E-3258116No hitNo description
PRINTSPR003672.1E-108096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MTSLNSSSSP TSSSSDQSDA TTATTATSTH LSEGTPPREN TRKRQRDCSS SSPKHPVYRG  60
VRMRSWGKWV SEIRQPRKKT RIWLGTFATA DMAARAHDVA ALTIKGSSAV INFPELASLF  120
PRPVSSSPQD IQAAAAEAAA MVVEEGKTSE TETETETETS SETQPPSESS EEERLEEIVE  180
LPNIEEEGRY DESVTSRADM AYSEPLDCWV YPPVLDFYEE ISSEFNFVEL WSFPPHTELI  240
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17551151273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00362DAPTransfer from AT3G16280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014506m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV LIGHT. {ECO:0000269|PubMed:16307362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230461e-106AB023046.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYA6.
GenBankATAC0016451e-106AC001645.1 Arabidopsis thaliana chromosome III BAC T02O04 genomic sequence, complete sequence.
GenBankAY5608461e-106AY560846.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At3g16280) mRNA, complete cds.
GenBankAY9951521e-106AY995152.1 Arabidopsis thaliana AP2/EREBP transcription factor family protein mRNA, complete cds.
GenBankCP0026861e-106CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298435.11e-175ethylene-responsive transcription factor ERF036
SwissprotQ9LU182e-93ERF36_ARATH; Ethylene-responsive transcription factor ERF036
TrEMBLR0I4R01e-174R0I4R0_9BRAS; Uncharacterized protein
STRINGXP_006298435.11e-175(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16280.17e-62ERF family protein