PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G16280.1 | ||||||||
Common Name | ERF036, MYA6.9, T02O04.22 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26204.8 Da PI: 4.4926 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.8e-17 | 59 | 109 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr p++ ++r++lg+f ta++Aa+a++ a++ ++g AT3G16280.1 59 PVYRGVRMRS-WGKWVSEIRQPRK---KTRIWLGTFVTADMAARAHDVAALTIKG 109 68*****998.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.0E-12 | 59 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-31 | 60 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.537 | 60 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-35 | 60 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-20 | 60 | 118 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.4E-10 | 61 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.83E-32 | 61 | 119 | No hit | No description |
PRINTS | PR00367 | 3.4E-10 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009046 | anatomy | flower | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MTSLNSSASP TSSSSDQSDA TTTTSTHLSE EEAPPRNNNT RKRRRDSSSA SSSSSMQHPV 60 YRGVRMRSWG KWVSEIRQPR KKTRIWLGTF VTADMAARAH DVAALTIKGS SAVLNFPELA 120 SLFPRPASSS PHDIQTAAAE AAAMVVEEKL LEKDEAPEAP PSSESSYVAA ESEDEERLEK 180 IVELPNIEEG SYDESVTSRA DLAYSEPFDC WVYPPVMDFY EEISEFNFVE LWSFNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-18 | 49 | 117 | 3 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 40 | 44 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.50189 | 0.0 | floral meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145338582 | 0.0 | ||||
Genevisible | 259374_at | 0.0 | ||||
Expression Atlas | AT3G16280 | - | ||||
AtGenExpress | AT3G16280 | - | ||||
ATTED-II | AT3G16280 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00362 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G16280.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV LIGHT. {ECO:0000269|PubMed:16307362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G16280 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023046 | 0.0 | AB023046.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYA6. | |||
GenBank | ATAC001645 | 0.0 | AC001645.1 Arabidopsis thaliana chromosome III BAC T02O04 genomic sequence, complete sequence. | |||
GenBank | AY560846 | 0.0 | AY560846.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At3g16280) mRNA, complete cds. | |||
GenBank | AY995152 | 0.0 | AY995152.1 Arabidopsis thaliana AP2/EREBP transcription factor family protein mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001327746.1 | 1e-172 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9LU18 | 1e-173 | ERF36_ARATH; Ethylene-responsive transcription factor ERF036 | ||||
TrEMBL | A0A1I9LT94 | 1e-171 | A0A1I9LT94_ARATH; Integrase-type DNA-binding superfamily protein | ||||
STRING | AT3G16280.1 | 1e-171 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15041 | 16 | 18 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT3G16280.1 |
Entrez Gene | 820874 |
iHOP | AT3G16280 |
wikigenes | AT3G16280 |