PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10014420m
Common NameCARUB_v10014420mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 263aa    MW: 30329.2 Da    PI: 8.8825
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10014420mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-15125214198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f+k +++s+v+   +l lp +f+++h  k  ++  +tl de+ +++  k+ ++k++    l++GW++F  +++L +gD vvF+l+  ++f  +v
  Carubv10014420m 125 FVKPMLQSHVTGGFWLGLPLRFCKTHLPK--RDEWMTLVDEEDEEFVAKYLVEKNG----LSGGWRGFSIDHQLVDGDAVVFHLITPTTF--KV 210
                      89*********************999433..4558***************777777....***********************9976666..88 PP

                      EEE- CS
               B3  95 kvfr 98 
                       ++r
  Carubv10014420m 211 YIIR 214
                      8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-19116215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-24118216IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-24123214No hitNo description
PfamPF023627.8E-14125214IPR003340B3 DNA binding domain
SMARTSM010195.9E-20125216IPR003340B3 DNA binding domain
PROSITE profilePS5086310.644125216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVESELSYEQ IRLKRVEENK KRMGELNLNK LAQSLRVSSS PKPSPSKTRT MRMPVDFSEV  60
RRSSRAKGPP PSYKEFGLEP LERPRRSYQR RDLLNRVYAS DEARVYAVDR AEKLQSSLDP  120
EFPSFVKPML QSHVTGGFWL GLPLRFCKTH LPKRDEWMTL VDEEDEEFVA KYLVEKNGLS  180
GGWRGFSIDH QLVDGDAVVF HLITPTTFKV YIIRVNDDGN NDSDVNEEDE EDDIDINKKE  240
KEHVSEARQL RSSGKRKRGG RK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10014420m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936210.0AB493621.1 Arabidopsis thaliana At3g19184 mRNA for hypothetical protein, partial cds, clone: RAAt3g19184.
GenBankDQ4875610.0DQ487561.1 Arabidopsis thaliana clone 0000004119_0000003454 unknown protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298352.10.0B3 domain-containing protein At3g19184
SwissprotQ1G3M31e-145Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLR0I0400.0R0I040_9BRAS; Uncharacterized protein
STRINGXP_006298352.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-121B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]