PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014350m | ||||||||
Common Name | CARUB_v10014350mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 281aa MW: 32264 Da PI: 9.2863 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 149.9 | 1.2e-46 | 8 | 135 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPt+eel+++yLk+ v gk+ ++ evi+ ++iy+++PwdLp + +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d++++s Carubv10014350m 8 PGFRFHPTEEELLDFYLKNMVYGKRSSV-EVISFLNIYRHDPWDLPgLSRILGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKIISL 100 9************************999.99***************533334789************************************987 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++glkktLvfy+grap g+ktdWvm+e+r+ Carubv10014350m 101 sePKRVIGLKKTLVFYRGRAPGGSKTDWVMNEFRM 135 557778***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-56 | 6 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.255 | 6 | 153 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-24 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045792 | Biological Process | negative regulation of cell size | ||||
GO:0048281 | Biological Process | inflorescence morphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGKETELPGF RFHPTEEELL DFYLKNMVYG KRSSVEVISF LNIYRHDPWD LPGLSRILGE 60 REWYFFVPRE RKHGNGGRPS RTTEKGYWKA TGSDRKIISL SEPKRVIGLK KTLVFYRGRA 120 PGGSKTDWVM NEFRMPDNCT LPKDVVLCKI YRKATSLKVL EQRAEMEAKM NQTCPNSPLS 180 SSETISFIGK EENLMMASFR APQEIAMEEA NKFLTLQENA KNQEKQRETE TRDTSSSLKL 240 PFGSLPELQL PKQGVEWGPE LLSISPWLQN LTPIVNLLNW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-44 | 8 | 156 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-44 | 8 | 156 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-44 | 8 | 156 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-44 | 8 | 156 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-44 | 8 | 156 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-44 | 8 | 156 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-44 | 8 | 156 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-44 | 8 | 156 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-44 | 8 | 156 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-44 | 8 | 156 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-44 | 8 | 156 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-44 | 8 | 156 | 22 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-44 | 8 | 156 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-44 | 8 | 156 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014350m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF361804 | 0.0 | AF361804.1 Arabidopsis thaliana At2g17040 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298285.1 | 0.0 | NAC domain-containing protein 22 | ||||
Swissprot | Q10S65 | 2e-84 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | R0I4C9 | 0.0 | R0I4C9_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298285.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3899 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 0.0 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014350m |
Entrez Gene | 17892739 |
Publications ? help Back to Top | |||
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