PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10014242m | ||||||||
Common Name | CARUB_v10014242mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 308aa MW: 34906 Da PI: 9.8581 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 70.3 | 3.7e-22 | 65 | 145 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +Lie ++e++ +++rg lk ++Wee++ ++ + g+ rs++qC++k+e+++kr++ ++++++ s +p+++q+e Carubv10014242m 65 WTHDETFLLIESYKEKWYAIGRGPLKTNHWEEIAVAVsGRSGVDRSSTQCRHKIEKMRKRFRSERQSMGPI-----SIWPFYNQME 145 ***********************************998899****************************84.....68*******8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.5E-19 | 65 | 147 | No hit | No description |
PROSITE profile | PS50090 | 6.609 | 65 | 122 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 308 aa Download sequence Send to blast |
MATPSPTSSP PSDSNPNSAA TPPHQTQQPS PPHTNPSSTP PPHITVVALA ASTSSHARKT 60 QPILWTHDET FLLIESYKEK WYAIGRGPLK TNHWEEIAVA VSGRSGVDRS STQCRHKIEK 120 MRKRFRSERQ SMGPISIWPF YNQMEELDSN PAPISARPLT RLPPNSSNHY QEDEEEEDHY 180 EEEDEDDERQ SKSRSINYIL RRPGSVNRFA GVGGGLLSWG QRDRSSKRKR NKNDGDGGER 240 RRKGVRAVAA EIRAFAERVM VMEKKKMEFA KETVKLRKEM EIRRIDLIQS SQAQLLQFLN 300 NAFDSSF* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 227 | 242 | RKRNKNDGDGGERRRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10014242m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB028609 | 0.0 | AB028609.2 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8. | |||
GenBank | AK118157 | 0.0 | AK118157.1 Arabidopsis thaliana At3g24860 mRNA for unknown protein, complete cds, clone: RAFL19-47-G19. | |||
GenBank | BT005491 | 0.0 | BT005491.1 Arabidopsis thaliana clone U50805 unknown protein (At3g24860) mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298195.1 | 0.0 | trihelix transcription factor ASIL1 | ||||
TrEMBL | R0I446 | 0.0 | R0I446_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298195.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10281 | 22 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24860.1 | 1e-148 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10014242m |
Entrez Gene | 17891154 |