PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10014118m | ||||||||
Common Name | CARUB_v10014118mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 37864.6 Da PI: 6.287 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.7 | 2.6e-54 | 21 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdee++++yLk+kv + ++++ +i ++d++k ePwdLpk++k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdke+++ Carubv10014118m 21 LPPGFRFHPTDEEIITHYLKEKVFNIRFTA-AAIGQADLNKNEPWDLPKMAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFR 113 79*************************999.78***************9999999*************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 kg lvg+kktLvfy+grapkgekt+Wvmheyrl Carubv10014118m 114 GKGCLVGMKKTLVFYTGRAPKGEKTNWVMHEYRL 147 9*******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-62 | 18 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.126 | 21 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-29 | 22 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:1903648 | Biological Process | positive regulation of chlorophyll catabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000975 | Molecular Function | regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MVEEGCSVVV NQGGDQEVVD LPPGFRFHPT DEEIITHYLK EKVFNIRFTA AAIGQADLNK 60 NEPWDLPKMA KMGEKEFYFF CQRDRKYPTG MRTNRATVSG YWKATGKDKE IFRGKGCLVG 120 MKKTLVFYTG RAPKGEKTNW VMHEYRLDGK YSYHNLPKTA RDEWVVCRVF HKNAPPTTTV 180 IAPNHISRID SLDNIDHFLD FSSLPPLIDP GFLSQPSPSF SGAGHDLKPV LHHPTTALVP 240 TQTLNFPYHS GNNFRSDSGY GAGSDNNNKG MIKLENSLVS GSQETGLSTD VNTTATPEIS 300 SYPLMMNPAA DAALMMDGSK SACDDLDDLI FWDDDFYSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-51 | 19 | 174 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-51 | 19 | 174 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-51 | 19 | 174 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-51 | 19 | 174 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-51 | 19 | 174 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-51 | 19 | 174 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-51 | 19 | 174 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-51 | 19 | 174 | 18 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00332 | DAP | Transfer from AT3G04060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10014118m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF361623 | 0.0 | AF361623.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds. | |||
GenBank | AY081834 | 0.0 | AY081834.1 Arabidopsis thaliana AT3g04060/T11I18_17 mRNA, complete cds. | |||
GenBank | AY084852 | 0.0 | AY084852.1 Arabidopsis thaliana clone 119460 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298074.1 | 0.0 | NAC domain-containing protein 46 | ||||
Swissprot | Q9SQQ6 | 0.0 | NAC46_ARATH; NAC domain-containing protein 46 | ||||
TrEMBL | R0G5Z5 | 0.0 | R0G5Z5_9BRAS; Uncharacterized protein | ||||
STRING | XP_006298074.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2269 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 0.0 | NAC domain containing protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10014118m |
Entrez Gene | 17892887 |
Publications ? help Back to Top | |||
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