PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10013982m | ||||||||
Common Name | CARUB_v10013982mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 371aa MW: 42303 Da PI: 4.7474 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.1e-06 | 90 | 113 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC ff + G+C+ G +CkF+H+ Carubv10013982m 90 KSILCEFFKA-GQCQKGFKCKFSHD 113 6679**7777.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.7E-5 | 88 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-6 | 88 | 113 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.272 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 90 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1 | 159 | 196 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.793 | 159 | 197 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF16543 | 2.1E-17 | 217 | 295 | IPR032378 | ZC3H15/TMA46 family, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MPPKQQPKAD LAKKQKQVED KTFGLKNKNK SKNVQKYVQS LKQSVQPKPD ASKAAAKKKK 60 EEEKAREQEL NELFKVAISQ PKVPVGVDPK SILCEFFKAG QCQKGFKCKF SHDLNIQRKG 120 EKIDIYSDKR DEDGDMDEWD QETLEKVVES KKNEYNQNKP TDIVCKYFLD AVEKKQYGWF 180 WSCPNGGKEC HYRHALPPGY VLKSQMKALL EEESSKKLAV EDEIENERAK LQTATQMTPA 240 LFMEWKRKKI AERDAGLAAS QAERAKNDRM SGRELFLSNA SLFVDDAEAC EEYEREREQE 300 ETEQKAKNKE TEAGTSKSSG DAEQSSKEVD EEDEDDDDDD DLDMDELDEL EASLSKTSIQ 360 IREPNNEGSS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10013982m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006569 | 4e-95 | AC006569.5 Arabidopsis thaliana chromosome 2 clone F11A3 map mi148, complete sequence. | |||
GenBank | CP002685 | 4e-95 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297939.1 | 0.0 | zinc finger CCCH domain-containing protein 21 | ||||
Swissprot | Q9SK74 | 0.0 | C3H21_ARATH; Zinc finger CCCH domain-containing protein 21 | ||||
TrEMBL | R0G5K7 | 0.0 | R0G5K7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0338s0020.1.p | 0.0 | (Capsella grandiflora) | ||||
STRING | XP_006297939.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4874 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20280.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10013982m |
Entrez Gene | 17892178 |