PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013929m
Common NameCARUB_v10013929mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WOX
Protein Properties Length: 385aa    MW: 43544.9 Da    PI: 7.1707
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013929mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.58.7e-22107166357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      +R+++t++ql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Carubv10013929m 107 SRWNPTPDQLRVLEELYRQgTRTPSADHIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 166
                      7*****************99**************************************97 PP
2Wus_type_Homeobox117.75.3e-38106168365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Ptp+Q+++Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
    Carubv10013929m 106 SSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 168
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.1E-5104171IPR001356Homeobox domain
SuperFamilySSF466898.48E-12107172IPR009057Homeodomain-like
PfamPF000461.7E-19107166IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-9107166IPR009057Homeodomain-like
CDDcd000863.20E-6108168No hitNo description
PROSITE profilePS5007110.867112167IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MWTMGYNEGG PDSFNGGRRL RPLIPRLSSC PTAAPNTNSD HRFNMGLILS LPSSLFLIHS  60
LVSLILTALL TVFIFTAVMT MTAEQNKREL MMLNSEPQHP PAVMVSSRWN PTPDQLRVLE  120
ELYRQGTRTP SADHIQQITA QLRRYGKIEG KNVFYWFQNH KARERQKRRR QMETGQEESV  180
LTTASLVSNH GFDKKDPPGY KVEQAKNWIC SVGCDTQLEK PCHNDDHEEE PANIRVERNG  240
RCGGDERRGF LGRNVTWQMM QLPPGLYPSS HHHQRNQLVL NSTTVSPNVS TSSFNTVSPA  300
KDSVTLLPVF QSTRGATNAE SCLRNCDDNK DQEGHEECSN SESDHQEQTL ELFPLRKEGF  360
CSDAEKAKEI SGIHCFYEFL PLKN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013929m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642285.10.0WUSCHEL-related homeobox 1 isoform X1
SwissprotQ6X7K00.0WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLR0HYV80.0R0HYV8_9BRAS; Uncharacterized protein
STRINGXP_006297887.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.10.0WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]