PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013916m
Common NameCARUB_v10013913mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 388aa    MW: 43122.2 Da    PI: 7.3752
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013916mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-09105129126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt+ C  f++ GtC+ G+ C+FaHg
  Carubv10013916m 105 YKTRMCAKFRA-GTCRNGELCNFAHG 129
                      9**********.*************8 PP
2zf-CCCH19.61.7e-061922061125
                      GTS.--TTTTT-SS-S CS
          zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                        G +C+yGdrC+F+H
  Carubv10013916m 192 F-GeECPYGDRCNFIH 206
                      5.449*********** PP
3zf-CCCH43.93.9e-14271297127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC+ f  tG+C++Gd+C+FaHg+
  Carubv10013916m 271 WKTRLCMKFEITGQCPFGDKCHFAHGQ 297
                      8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.8E-15102137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-8103135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793104131IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-4104130IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5105129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455181209IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6181207IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036181208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-8183207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-10267301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-15269300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507270298IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7270297IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-11271297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSPYGGW NQTQMTDLVA NPVNNEQGDL HSLSESQSQS QSSQQLQPSL  60
KRPRLVDDNV FNPASSFPPP TSSNPWMVPS LNPPPVNKGT ANIFYKTRMC AKFRAGTCRN  120
GELCNFAHGI EDLRQPPSNW QEIVGPPGQD RDRERERERE RERPSLAPVG NNNWEDDQKI  180
ILRMKLCRKF CFGEECPYGD RCNFIHEDLS KFREDSGKLR ESSVISVGTT AADLQSVDNS  240
TASNHIEVSR QGSIPVPVPM NNGGAVKTVY WKTRLCMKFE ITGQCPFGDK CHFAHGQAEL  300
HNSVGRVEGE AVNGVASLSK QTVVPANEAF AMKPTAQLTA DSSGLNEEGR RKKCLLKWSD  360
SKKINRIYGD WIDDLPVGQK STKPVES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152162RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013916m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0372260.0AY037226.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
GenBankAY0817450.0AY081745.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297872.10.0zinc finger CCCH domain-containing protein 39
RefseqXP_006297873.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT810.0C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLR0HYU20.0R0HYU2_9BRAS; Uncharacterized protein
STRINGXP_006297872.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.10.0C3H family protein