PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013771m
Common NameCARUB_v10013771mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 426aa    MW: 49262.7 Da    PI: 4.5804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013771mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-18154204155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      + ++GVr++  +g+WvAeIr+p   + r  r +lg+f taeeAa a+++a++ ++g
  Carubv10013771m 154 CSFRGVRQRI-WGKWVAEIREP---N-RgSRLWLGTFPTAEEAASAYDEAARVMYG 204
                      579****998.**********8...3.35**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-12154204IPR001471AP2/ERF domain
CDDcd000188.24E-32154212No hitNo description
PROSITE profilePS5103222.089155212IPR001471AP2/ERF domain
SMARTSM003801.8E-38155218IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-31155213IPR001471AP2/ERF domain
PRINTSPR003671.3E-9156167IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-21156213IPR016177DNA-binding domain
PRINTSPR003671.3E-9178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010286Biological Processheat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MLYIPLLFLN ILFSGKKHER EEREESFRRR FDFCRFLTTN NIEQLREKED FLFPIKEEVR  60
LGILESFTID SVIATKRKMA IYDQTGNNIP KKRKSRARAD GLTVADRLKK WKEYNEIVDA  120
STIIEGEKPR RRVPAKGSKK GCMKGKGGPE NPHCSFRGVR QRIWGKWVAE IREPNRGSRL  180
WLGTFPTAEE AASAYDEAAR VMYGPLARLN FPQCVGSEFT STSSQSEVCT LEDKAVLCGD  240
ICVKQEDTDC ESKQYSQVLD FKEESGETRR DNCGVGHQDA DTVLDYDLLK EFEQRYWGEA  300
MTEEERLKQE EEERPKQEEE EKVKQEEEEM QQHQHQQQQQ QLDLLTVGDY GWPWPNDMEN  360
EQSSWDPNEF FDIDELLGDM SEGMLHGPGQ SEDQNNIDSG SYDLHPLHLE PHDGHEFDGL  420
SSLDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-17156212360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-17156217668ATERF1
3gcc_A8e-17156217668ATERF1
5wx9_A2e-161532131273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17593KRKMAIYDQTGNNIPKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00346DAPTransfer from AT3G11020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013771m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642166.10.0dehydration-responsive element-binding protein 2B
SwissprotO821331e-162DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLR0G5H10.0R0G5H1_9BRAS; Uncharacterized protein
STRINGXP_006297738.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.11e-153DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Djafi N, et al.
    The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.
    Front Plant Sci, 2013. 4: p. 307
    [PMID:23964284]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim K, et al.
    Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants.
    Mol. Cells, 2014. 37(2): p. 109-17
    [PMID:24598995]
  4. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  5. Lee SY,Boon NJ,Webb AA,Tanaka RJ
    Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2147-2160
    [PMID:27497445]