PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013623m
Common NameCARUB_v10013623mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 470aa    MW: 51218.4 Da    PI: 8.2466
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013623mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017.3e-32208264259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+he
  Carubv10013623m 208 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 264
                      8****************************************.***************8 PP
2WRKY105.13.7e-33355413159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  Carubv10013623m 355 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDAKAVITTYEGKHNHD 413
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-28200266IPR003657WRKY domain
SuperFamilySSF1182902.22E-25205266IPR003657WRKY domain
SMARTSM007743.4E-35207265IPR003657WRKY domain
PfamPF031061.5E-24208263IPR003657WRKY domain
PROSITE profilePS5081124.03208266IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-36340415IPR003657WRKY domain
SuperFamilySSF1182904.32E-29347415IPR003657WRKY domain
PROSITE profilePS5081137.734350415IPR003657WRKY domain
SMARTSM007743.8E-38355414IPR003657WRKY domain
PfamPF031061.6E-25356413IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MAVEDDVSSS IRTTTLVAPT RPTITVPQRP PAIETAAYFF GGGDGLSLSP GPLSFVSSFF  60
VDSFPDVLTP DNQRTTSSFS QLLAGAMSVS PGAGGGGRST AGMFPGGGPM FTVPSGFSPS  120
SLLTSPIFFP PHQQSTAQTS FVQPQPQPHQ PQRQDTFSHH MPTSTSTAIH GRQSFEVSQA  180
DQRARNHHNN PANNSRSYNV VNVDKPADDG YNWRKYGQKP IKGCEYPRSY YKCTHVNCPV  240
KKKVERSSDG QITQIIYKGQ HDHERPQNRR GGGSRDSVEA GDHIHFVVGG AGHVMESSDD  300
SGYGKDHDDD NNDDDDGDED LPGSKIRKID GVSTTHRTVT EPKIIVQTRS EVDLLDDGYR  360
WRKYGQKVVK GNPHPRSYYK CTTANCTVRK HVERASTDAK AVITTYEGKH NHDVPAARNG  420
TAAAGTSDQH RMRSMSGNNM QQNMSFGSNN NNSGQSPVLL RLKEEKITI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-38208416878Probable WRKY transcription factor 4
2lex_A2e-38208416878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013623m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297602.10.0probable WRKY transcription factor 58 isoform X1
SwissprotQ93WU70.0WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLR0HY980.0R0HY98_9BRAS; Uncharacterized protein
STRINGXP_006297602.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-168WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]