PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10013370m | ||||||||
Common Name | CARUB_v10013370mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 559aa MW: 63110.6 Da PI: 4.2572 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166 | 1.4e-51 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l+pGfrFhPtdeelv +yLk+k+ +k++++ ++i+ +++yk+ePwdLp +k+k+++ ewyfFs+ d+ky +g+++nrat+ gyWk+tgkd+e+ Carubv10013370m 9 LAPGFRFHPTDEELVRYYLKRKICNKPFKF-DAISVAHVYKSEPWDLPdkAKLKSRDLEWYFFSTLDSKYGNGSKTNRATEMGYWKTTGKDREI 101 579**************************9.99**************95337777777************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kktLv++kgrap+ge+t+Wvmheyrl Carubv10013370m 102 RN-GSKVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 136 *9.9******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-60 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.298 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-28 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009819 | Biological Process | drought recovery | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MGGGSATSLA PGFRFHPTDE ELVRYYLKRK ICNKPFKFDA ISVAHVYKSE PWDLPDKAKL 60 KSRDLEWYFF STLDSKYGNG SKTNRATEMG YWKTTGKDRE IRNGSKVVGM KKTLVYHKGR 120 APRGERTNWV MHEYRLVDEE LEKTGVHQDA YVLCRIFQKS GSGPKNGEQY GAPFVEEEWE 180 EEDDMSFEPD PDLGSEDHVY VHMDDTDQKP DNLVVYDAIP LPLNFNHGES SNNAETNYSD 240 SINYIQPGNY VDSGGYFEKP EECSEKDQKP IICDGNLHNE ALFQDDEIGS GVQNEQMANL 300 QSSDNMFGTG SLCYNDLSVE SNYLIGDAFL DPNSNLLHND GLYLETNDLS STQQDGFYFE 360 DYLTFFDEDD ENAQNLTFDP SQLMGNEDAF VDQEELFQEI ETEELKKEET IGDKQVVEEK 420 EKDEASCSKQ FDADATEFEP DYKYPFLKKA SDMLGAIPAP PAFASEFPTK DAAIRLNAGQ 480 SSGSVHVTAG MITISDSNMG WSYDKNVNRD LILSYHFVQE NASGKLGNSL TRAMLIFMCF 540 WILLLSVSFK VSTLVASR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-45 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-45 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-45 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-45 | 8 | 165 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-45 | 8 | 165 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 8e-45 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-45 | 8 | 165 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (Ref.6, PubMed:24323506, PubMed:25219309). Promotes reactive oxygen species (ROS) production during drought-induced leaf senescence. In response to abscisic acid (ABA)-mediated drought stress signals, binds directly to the promoters of RBOHC and RBOHE genes, encoding ROS biosynthetic enzymes, resulting in ROS accumulation and triggering leaf senescence via programmed cell death (PCD). ROS-induced leaf senescence sustains plant survival under drought conditions (PubMed:22313226). Involved in heat stress response. Modulates PCD through a ROS-mediated positive feedback control under heat stress conditions. This may provide an adaptation strategy for plant survival under extreme heat stress conditions (PubMed:25219309). Acts as repressor in preventing anther dehiscence during stamen development by suppressing genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1, AOS, AOC3, OPR3 and 4CLL5/OPCL1 (PubMed:24323506). {ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:24323506, ECO:0000269|PubMed:25219309, ECO:0000269|Ref.6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00343 | DAP | Transfer from AT3G10500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10013370m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) (PubMed:22313226, PubMed:25219309). Induced by heat shock (PubMed:25219309). Induced by cold, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:25219309}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY051003 | 0.0 | AY051003.1 Arabidopsis thaliana unknown protein (At3g10500) mRNA, complete cds. | |||
GenBank | AY079345 | 0.0 | AY079345.1 Arabidopsis thaliana unknown protein (At3g10500) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297351.1 | 0.0 | NAC domain-containing protein 53 | ||||
Swissprot | Q949N0 | 0.0 | NAC53_ARATH; NAC domain-containing protein 53 | ||||
TrEMBL | R0HKM1 | 0.0 | R0HKM1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006297351.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 0.0 | NAC domain containing protein 53 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10013370m |
Entrez Gene | 17890901 |
Publications ? help Back to Top | |||
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