PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10013105m

Common Name

CARUB_v10013105mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

C3H

Protein Properties

Length: 692aa MW: 76826.5 Da PI: 8.9558

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10013105m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.3e-06	231	250	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ f++ G+C+ G+ C+F+H Carubv10013105m 231 PCK-FLAAGFCRNGNYCRFSH 250 799.6666************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.061	226	253	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MSGLGRTHVS NWDSKEDSHH HHSSLTASSG AYYRDKESEP VRFNSESNGS RRSGAETNQH 60 PGEARSRSIV SQSNDNSYDS ERDDTRQQIF PRNGSRSNSM SRSRSRSPVY RGKHKTRTLV 120 SPTPIREFNK RGSGHHFDQS NDHGLEDDTR KPRKTKYHTD DFRGEAMMTG ARFSVYNTKF 180 PEDNSRREHL HDNGFSDPRL RRHRSEFTGV KDTQRRNGDG EGQFHRTSNI PCKFLAAGFC 240 RNGNYCRFSH HGAGRKQPQD KHFYRQDSNN HNKWNDVERL DNGRLGGIEV SRASKGVSEP 300 NRNSSSWIDD MEMSPDWNYG VQSLKNPVKE EHSVGIIGQS SQSQVLKGGL VSHNEQSSGM 360 FSHGGKTMVE KPIAASHQSY SHPVNVTPVQ AFSQNHNVLP YQSSLTAGGS QQVLATAAAD 420 LSVGSNLSNV ESGKVYQNNH QSTVERPVLV QNTVSKEQLD KITSISATIA QFLANGEPIP 480 ELVKALQMPL HSESSMDIQP NQATTTVHSQ SNVMSSNPNQ LCGLGMNIGA GGVPVVTASQ 540 VNNVSGIQDL TLNPKGCEEN RNKKTHESSK EEEGKKTGED TNDAENIVDE DEDDVGSDKE 600 NKKGIDPKEM RAFKFALVEV VKELLNPTWK EGKMDKDGYK NIVKKVVEKV TVTMQSGSVP 660 QTQENIDHYL SASKPKLTKL VQAYISKIKK T*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MSGLGRTHVS NWDSKEDSHH HHSSLTASSG AYYRDKESEP VRFNSESNGS RRSGAETNQH  60
PGEARSRSIV SQSNDNSYDS ERDDTRQQIF PRNGSRSNSM SRSRSRSPVY RGKHKTRTLV  120
SPTPIREFNK RGSGHHFDQS NDHGLEDDTR KPRKTKYHTD DFRGEAMMTG ARFSVYNTKF  180
PEDNSRREHL HDNGFSDPRL RRHRSEFTGV KDTQRRNGDG EGQFHRTSNI PCKFLAAGFC  240
RNGNYCRFSH HGAGRKQPQD KHFYRQDSNN HNKWNDVERL DNGRLGGIEV SRASKGVSEP  300
NRNSSSWIDD MEMSPDWNYG VQSLKNPVKE EHSVGIIGQS SQSQVLKGGL VSHNEQSSGM  360
FSHGGKTMVE KPIAASHQSY SHPVNVTPVQ AFSQNHNVLP YQSSLTAGGS QQVLATAAAD  420
LSVGSNLSNV ESGKVYQNNH QSTVERPVLV QNTVSKEQLD KITSISATIA QFLANGEPIP  480
ELVKALQMPL HSESSMDIQP NQATTTVHSQ SNVMSSNPNQ LCGLGMNIGA GGVPVVTASQ  540
VNNVSGIQDL TLNPKGCEEN RNKKTHESSK EEEGKKTGED TNDAENIVDE DEDDVGSDKE  600
NKKGIDPKEM RAFKFALVEV VKELLNPTWK EGKMDKDGYK NIVKKVVEKV TVTMQSGSVP  660
QTQENIDHYL SASKPKLTKL VQAYISKIKK T*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10013105m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023641197.1	0.0	zinc finger CCCH domain-containing protein 38
Swissprot	Q9LIH5	0.0	C3H38_ARATH; Zinc finger CCCH domain-containing protein 38
TrEMBL	R0G3V2	0.0	R0G3V2_9BRAS; Uncharacterized protein
STRING	XP_006297102.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9160	12	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	8e-12	C3H family protein

Link Out ? help Back to Top
Phytozome	Carubv10013105m
Entrez Gene	17892573