PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10012756m | ||||||||
Common Name | CARUB_v10012756mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GeBP | ||||||||
Protein Properties | Length: 248aa MW: 28080.8 Da PI: 5.7823 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 32.8 | 1.9e-10 | 77 | 109 | 2 | 34 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddi 34 +fq +wse+De++lLqGli++k++tg ++ + + Carubv10012756m 77 NFQHVWSEDDEVALLQGLINYKTDTGGEALEST 109 79************************8766654 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MVFEGSFKVD PKILVLTEKK VEDGVTVKKV EAPMKPVVTE KQEVKRYVEN RSSETTNEGD 60 SVNRGKVSEK KEKKKPNFQH VWSEDDEVAL LQGLINYKTD TGGEALESTG KSKRVASLKH 120 EDAERVSSSL VRTLVYVGVD ELAAQQGLSM IALEDKKRYE EQKALQAREF DFYSEKAKFL 180 HQITLVHFGV DELAAQQGLS RLASEDMKRY EEQWKALQAR EFDFYSEKAG LLHQMLAEMV 240 EASRSNV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10012756m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023633405.1 | 1e-117 | probable transcription factor At1g11510 | ||||
TrEMBL | R0GLZ1 | 1e-179 | R0GLZ1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006279315.1 | 1e-180 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM33604 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 1e-19 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Carubv10012756m |
Entrez Gene | 17874449 |