PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10012613m | ||||||||
Common Name | CARUB_v10012613mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 346aa MW: 39155.1 Da PI: 6.4979 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8e-05 | 177 | 196 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Carubv10012613m 177 FSCPLCFKTFNRYNNMQMHM 196 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.0003 | 261 | 283 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ Carubv10012613m 261 FACRRCGKAFAVKGDWRTHEKNC 283 78*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-5 | 177 | 196 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.66 | 177 | 204 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 179 | 199 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.22E-6 | 247 | 281 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-5 | 248 | 281 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.767 | 261 | 281 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MSNPACSNLF NNGCDHDNIN YSTSLSYIYN SHGSFYYPNT TNPSYINPTT TTSTFPNSPP 60 LREALPLLSL SPIRHQEQQD RDYFMDTDQI SSSNFLDDPH VTVDLHLGLP NYGVDESIGS 120 YIAPDATTED QDQDHDQGVE VTVESHLHDD DHHGDLHRGH HYWIPTPSQI LIGPTQFSCP 180 LCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCFCCAPGC KNNIDHPRAK 240 PLKDFRTLQT HYKRKHGSRP FACRRCGKAF AVKGDWRTHE KNCGKLWYCS CGSDFKHKRS 300 LKDHVKAFGN GHVPCGIDSF GGDPEDYYEA ASDIEQQDDS NNNEF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00197 | DAP | Transfer from AT1G51220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10012613m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ311810 | 0.0 | AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306545.1 | 0.0 | zinc finger protein WIP5 | ||||
Swissprot | Q8W031 | 0.0 | ZWIP5_ARATH; Zinc finger protein WIP5 | ||||
TrEMBL | R0IQE2 | 0.0 | R0IQE2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006306545.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51220.1 | 0.0 | WIP domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10012613m |
Entrez Gene | 17897782 |
Publications ? help Back to Top | |||
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