PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012538m
Common NameCARUB_v10012538mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 318aa    MW: 34671 Da    PI: 4.8867
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012538mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20144193255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Carubv10012538m 144 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 193
                      59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.03E-35143203No hitNo description
PROSITE profilePS5103223.565144201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32144202IPR001471AP2/ERF domain
SMARTSM003804.3E-40144207IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-23144202IPR016177DNA-binding domain
PfamPF008479.2E-15145193IPR001471AP2/ERF domain
PRINTSPR003672.8E-11145156IPR001471AP2/ERF domain
PRINTSPR003672.8E-11167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009415Biological Processresponse to water
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MADFFGGGQG GELMEALQPF YKSASTSASD SAFASSNAAF ASAPNDSFSY SSYYNPHASF  60
TTSYPDLYSG SMTYPSSFGS DLQQPDSFEQ NYQSQFHYQD NITYPHQDNT CMLNFIDPSQ  120
PGFMTQQSPV SGLGSGSVSK PAKLYRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA  180
ALAYDRAAFK LRGDSARLNF PALRYQTGSS PSDSGEYGPI QAAVDAKLEA ILAEPKNQPG  240
KTERTSRKRA KATASSVKQP AATQQHSGSG ESDGSGSPTS DDVMVTEMCE EPEMPWNENF  300
ILGKCPSYEI DWATILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21143201160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-21142208369ATERF1
3gcc_A3e-21142208369ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00182DAPTransfer from AT1G36060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012538m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303237.10.0ethylene-responsive transcription factor ERF055
SwissprotQ9SKW50.0ERF55_ARATH; Ethylene-responsive transcription factor ERF055
TrEMBLR0ID660.0R0ID66_9BRAS; Uncharacterized protein
STRINGXP_006303237.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151241518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.11e-148ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]