PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012515m
Common NameCARUB_v10012515mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 372aa    MW: 41867.4 Da    PI: 5.431
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012515mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.7e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd+++++G g+W++ ++   ++R++k+c++rw +yl
  Carubv10012515m 14 KGPWTPEEDQKLVDYIHKHGHGSWRALPKLADLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.17.4e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
  Carubv10012515m  67 RGKFSAEEEQTILHLHSILGNK-WSAIATHLQ-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.44961IPR017930Myb domain
SuperFamilySSF466896.11E-3111108IPR009057Homeodomain-like
SMARTSM007173.3E-151363IPR001005SANT/Myb domain
PfamPF002491.2E-171461IPR001005SANT/Myb domain
CDDcd001671.97E-121661No hitNo description
PROSITE profilePS5129426.69762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-2765117IPR009057Homeodomain-like
SMARTSM007177.8E-1666114IPR001005SANT/Myb domain
PfamPF002498.3E-1667112IPR001005SANT/Myb domain
CDDcd001671.11E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDQKLVDYIH KHGHGSWRAL PKLADLNRCG KSCRLRWTNY  60
LRPDIKRGKF SAEEEQTILH LHSILGNKWS AIATHLQGRT DNEIKNFWNT HLKKKLIQMG  120
IDPVTHQPRT DLFASLPQLI ALANLKDLIE QTSQFSSIHA EAAQLAKLQY LQYMLNSSGA  180
LTNTNGNNNS PSSILDIDQN HAMDLLNSMV SWNKDQNPGF DPTLELEDNN QNQGLFPLGS  240
IIDAPTTQPL QQEEYHLNNS PPSELPSQGD PLLDHVPFNL QTPLNSEDHF IDNLVKHPID  300
HHEHHEHEHD DPSTWVLPSL IDHNPKNLTP SSLPHNNPED ASSSSSYGGC DAASFYWPDF  360
CFDETLMNDI S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012515m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195600.0AY519560.1 Arabidopsis thaliana MYB transcription factor (At1g34670) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306516.10.0transcription factor MYB41
SwissprotQ9S9Z20.0MYB93_ARATH; Transcription factor MYB93
TrEMBLR0IAG50.0R0IAG5_9BRAS; Uncharacterized protein
STRINGXP_006306516.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.10.0myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]