PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012513m
Common NameCARUB_v10012513mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 329aa    MW: 37109.4 Da    PI: 4.5132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012513mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-1692133146
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46 
                      sg+kGVr+++ +g+++AeIrdp e   +kr +lg+f t+eeAa+a+
  Carubv10012513m  92 SGFKGVRRRP-WGKYAAEIRDPFE---KKRKWLGTFPTEEEAAEAY 133
                      79********.**********644...5*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.51E-2192135No hitNo description
PfamPF008472.5E-992133IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1592137IPR016177DNA-binding domain
SMARTSM003801.4E-1593153IPR001471AP2/ERF domain
PROSITE profilePS5103218.95393150IPR001471AP2/ERF domain
PRINTSPR003673.1E-894105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-1994136IPR001471AP2/ERF domain
PRINTSPR003673.1E-8116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MIRSRDEVDD IVDLNVIRTV NVICNDPYAT DSSSDDDDEV VISGKNTRRR HIKPKPRKRF  60
VSRICVPTLI KRYENLSSST GNKAAGNRKT SSGFKGVRRR PWGKYAAEIR DPFEKKRKWL  120
GTFPTEEEAA EAYQRSKSVF DERMGLVKAE VDVVDLTKPC GVRKPEECSV RKKVHKKNVV  180
DNTFVCGGYV DEDEGLSIDK LLEDPLMTPS ISDIFRDSAV GSDDIWVDCN PAEFNSIFDD  240
FKLDSLEVDD KIGNEKTLGF KIGDTPAEIA STIANIFDDA DLREFEQLAD EFRLGDSPTD  300
DFWVLGEPDV GDDYNWLNST IDWIDKSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197117RRRPWGKYAAEIRDPFEKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012513m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545780.0AC254578.1 Capsella rubella clone JGIBSIA-13A21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632864.10.0ethylene-responsive transcription factor ERF117
SwissprotQ9M9B21e-127EF117_ARATH; Ethylene-responsive transcription factor ERF117
TrEMBLR0GU040.0R0GU04_9BRAS; Uncharacterized protein
STRINGXP_006306514.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165471013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49120.11e-120ERF family protein