PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012148m
Common NameCARUB_v10012148mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 460aa    MW: 51330.4 Da    PI: 9.3893
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012148mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00076403425123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C ++F++   L  H r+H
  Carubv10012148m 403 HECPICFRVFKSGQALGGHKRSH 425
                      79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.72E-6535No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5632IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.32931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596936IPR007087Zinc finger, C2H2
PfamPF139123.4E-4932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.4189111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.24289116IPR007087Zinc finger, C2H2
PROSITE patternPS00028090111IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-690111No hitNo description
PfamPF139120.002190113IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-6398425No hitNo description
SMARTSM003550.14403425IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974403425IPR007087Zinc finger, C2H2
PfamPF139123.9E-10403425IPR007087Zinc finger, C2H2
PROSITE patternPS000280405425IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEQFKERKFV CKFCSKRFAC GKSLGGHIRT HMNNENSADS DDDDSNKLKM IDENGGQSSY  60
GLRENPKKNK RFVDHRRMMA LKQQHQQLLC CRECGKGFVS SKALCGHMAC HSEREKIVMD  120
SQSDTEASSS PIRRRSKRVV VKHHYKANFL VGDNGIMNQS NSAYSDASGI EPEQQEMAMS  180
LMLLSMDSSF KKGHNLVVNS FAESSDNNSV ILETKSSSGE QLKMFNVNNV EELCKKNKLN  240
VDNQVRSGED NGDVLYDSDN SDSGYFRNGP KKLDSDFSVD GFLRNTGFDN SKAVMGSGSG  300
FNSSPAKQDK NWNRFRYKEG GSGSGSGSGR SSTKYDLRKS KRGFPSYGRK KIKYEFTESV  360
YDSGEYSLET DSCADTNRTI KIHSKSPMVK KASTGAKKKS KGHECPICFR VFKSGQALGG  420
HKRSHFIGNQ EHRTLVIQHQ VAHEMHTLID LNLPAPIDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012148m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934800.0AB493480.1 Arabidopsis thaliana At1g26610 mRNA for hypothetical protein, partial cds, clone: RAAt1g26610.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K70.0AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306284.10.0uncharacterized protein LOC17900354
TrEMBLR0GTA20.0R0GTA2_9BRAS; Uncharacterized protein
STRINGXP_006306284.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein