PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10012103m | ||||||||
Common Name | CARUB_v10012103mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 214aa MW: 23508.3 Da PI: 9.9936 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.2e-05 | 61 | 82 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cgk F ++ L H++ H Carubv10012103m 61 ECQYCGKEFANSQALGGHQNAH 82 7******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.30.20 | 8.1E-4 | 39 | 65 | IPR020542 | Aspartate carbamoyltransferase regulatory subunit, C-terminal |
SuperFamily | SSF57667 | 4.66E-6 | 58 | 87 | No hit | No description |
PROSITE profile | PS50157 | 11.801 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.0E-5 | 66 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSMSPTMSRA GESSSGSSSD KTIKLFGFEL ISGNRSPDIT TAESVSSSTN TTSLTVMKRL 60 ECQYCGKEFA NSQALGGHQN AHKKERLKKK RLQLQARRAS IGYYLTSHHQ PITTAFHGKY 120 KTQSYCAFSS MHVNDNNNQM GVYNEDWSPM SSQISFGNKN AGQDLNEQSG EMGKLYGVRP 180 NMIQFQRDLT SRSSSKRSIK SLDLHLGIAG DTA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin (GA). Acts upstream of GIS, GIS2, ZFP8 and the trichome initiation regulators GL1 and GL3 (PubMed:21803862, PubMed:22301962). Binds the promoter region of ZFP8, which may be a direct target of ZPF5 (PubMed:21803862). Is not involved in the regulation of trichome branching (PubMed:22301962). Modulates root hair initiation and elongation in response to cytokinin and ethylene signals by directly promoting expression of the CAPRICE (CPC) gene (PubMed:22762888). {ECO:0000269|PubMed:21803862, ECO:0000269|PubMed:22301962, ECO:0000269|PubMed:22762888}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10012103m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin and ethylene. {ECO:0000269|PubMed:22762888}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303794.1 | 1e-159 | zinc finger protein 5 | ||||
Swissprot | Q39264 | 1e-108 | ZFP5_ARATH; Zinc finger protein 5 | ||||
TrEMBL | R0GL44 | 1e-158 | R0GL44_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.15036s0012.1.p | 1e-159 | (Capsella grandiflora) | ||||
STRING | XP_006303794.1 | 1e-159 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7325 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10480.1 | 2e-92 | zinc finger protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10012103m |
Entrez Gene | 17899098 |
Publications ? help Back to Top | |||
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