PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10011955m

Common Name

CARUB_v10011955mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

ERF

Protein Properties

Length: 148aa MW: 15988.6 Da PI: 5.9069

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10011955m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53	8.8e-17	11	61	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykG+r++k +g+Wv+eIr+p + r r +lg+f tae+Aa a++ a +l++ Carubv10011955m 11 SKYKGIRRRK-WGKWVSEIRVPGT---RDRLWLGSFSTAEGAAVAHDVAFFCLHQ 61 89***998.******943...5*******************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.02E-28	11	73	No hit	No description
Pfam	PF00847	1.2E-8	11	59	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.96E-17	11	72	IPR016177	DNA-binding domain
SMART	SM00380	3.7E-33	12	77	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.9E-25	12	72	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.549	12	71	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.0E-9	13	24	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.0E-9	35	51	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MDYRESGESQ SKYKGIRRRK WGKWVSEIRV PGTRDRLWLG SFSTAEGAAV AHDVAFFCLH 60 QPDSLESLNF PHLLNPSIAS KTSPRSIQQA ASNAGMAIDA GIVHSNGFVS GNTAYSDTTT 120 SSESGGADEV EPLNISVYDY LDGHDHV*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00158	DAP	Transfer from AT1G22810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10011955m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF325106	1e-113	AF325106.1 Arabidopsis thaliana hypothetical protein (T22J18.2) mRNA, complete cds.
GenBank	AY086697	1e-113	AY086697.1 Arabidopsis thaliana clone 26867 mRNA, complete sequence.
GenBank	BT024683	1e-113	BT024683.1 Arabidopsis thaliana At1g22810 mRNA, complete cds.
GenBank	CP002684	1e-113	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	T22J18	1e-113	AC003979.2 Arabidopsis thaliana chromosome 1 BAC T22J18 sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006304697.1	1e-107	ethylene-responsive transcription factor ERF019
Swissprot	O80542	6e-88	ERF19_ARATH; Ethylene-responsive transcription factor ERF019
TrEMBL	R0IGV5	1e-105	R0IGV5_9BRAS; Uncharacterized protein
STRING	XP_006304697.1	1e-106	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3865	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22810.1	2e-90	ERF family protein

Link Out ? help Back to Top
Phytozome	Carubv10011955m
Entrez Gene	17896862

Publications ? help Back to Top
Scarpeci TE,Frea VS,Zanor MI,Valle EM Overexpression of AtERF019 delays plant growth and senescence, and improves drought tolerance in Arabidopsis. J. Exp. Bot., 2017. 68(3): p. 673-685 [PMID:28204526]