PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10011925m | ||||||||
Common Name | CARUB_v10011925mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 345aa MW: 39258.6 Da PI: 5.9492 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.2 | 1.3e-31 | 180 | 235 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+++LH+rF++a+++LGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+ Carubv10011925m 180 KQRRCWSSQLHRRFLNALQHLGGPHVATPKQIREFMKVDGLTNDEVKSHLQKYRLH 235 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.966 | 177 | 237 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.88E-16 | 179 | 238 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-27 | 179 | 238 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-28 | 180 | 235 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.3E-6 | 182 | 233 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0032107 | Biological Process | regulation of response to nutrient levels | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:1901699 | Biological Process | cellular response to nitrogen compound | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MIKNLSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKREIPEMT 60 TENVYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE ELMDDEHGNH DPDITDSEDK 120 NTKSDWLKSV QLWNQPDPLL PKEERLQQET METMKRDESM RKDPMMNGGE GRKREAEGRK 180 QRRCWSSQLH RRFLNALQHL GGPHVATPKQ IREFMKVDGL TNDEVKSHLQ KYRLHTRRPR 240 QTVSNNENSQ TQHFVVVGGL WVPQSDYSTG KTTGGTTASS TTTTTGIYGA MAAPPPPQWP 300 SHSNFRPSII VEEGSGSHSE EVVVRCSSPA MSSSTRNHYV KINN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present (PubMed:25723764). Involved in the modulation of primary root and root hair growth in phosphate-deprived environement (PubMed:19341407). May be required for suppressing abscisic acid (ABA) signaling in germinating embryo axis, which promotes the timely germination of seeds (PubMed:22545134). {ECO:0000269|PubMed:19341407, ECO:0000269|PubMed:22545134, ECO:0000269|PubMed:25723764}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00140 | DAP | Transfer from AT1G13300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10011925m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF367336 | 0.0 | AF367336.1 Arabidopsis thaliana At1g13300/T6J4_6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303753.1 | 0.0 | transcription factor HRS1 | ||||
Swissprot | Q9FX67 | 0.0 | HRS1_ARATH; Transcription factor HRS1 | ||||
TrEMBL | R0GLK2 | 0.0 | R0GLK2_9BRAS; Uncharacterized protein | ||||
STRING | XP_006303753.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13508 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13300.1 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10011925m |
Entrez Gene | 17900726 |
Publications ? help Back to Top | |||
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