PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011909m
Common NameCARUB_v10011909mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 461aa    MW: 51678.3 Da    PI: 8.8888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011909mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047931123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C k F++  +L  Hi+ H
  Carubv10011909m  9 FVCKVCYKEFPSGKSLGGHIKIH 31
                     89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.2E-4532IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.17E-5533No hitNo description
PfamPF139124.5E-8931IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138936IPR007087Zinc finger, C2H2
SMARTSM003550.18931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PfamPF139123.6E-697121IPR007087Zinc finger, C2H2
PROSITE profilePS501578.80897124IPR007087Zinc finger, C2H2
SMARTSM003550.297119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SMARTSM003550.13158182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
PfamPF139120.01165184IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MADGEEKKFV CKVCYKEFPS GKSLGGHIKI HSDHYKGNKK KRLVGQREKQ QQQQVCSHSE  60
EDEMSLDSES DSESEVSSAP TRKRSTRVID QKHKQQHSCK ECRNKFVSLK ALRAHMACHR  120
KGEEMLMDSE SDTESETSSS PTRKRSKRVM AEEHKQQRFC QVRGCGKGFV SFKAFNAHMA  180
CHSEKDTKML MDSHEFETSS DSKRERSKKV TIRSDSEYFS SGSLSFGSET DQDAGRAACI  240
LLMVNSGDSY ENIYNWEMNS RDKSSEKNSR IVKTKSSSGK KLKIFNVKSQ VLETGKVADG  300
DQLRSADDNG VIDLCDSDGS EFMNSSKKSD SDISVDGSPK NTGFGAGFNN SNRLRNSDKG  360
GSKYDLRTSK RGLFSYETDS SADTNRKIHR FRDSKDPVVK KAGGGKKNRK IHKCLICFKV  420
FKSGQEIAYG TGNQEHNQVT EVRYQFDLNL PAAADTDDEE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011909m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499023.11e-152PREDICTED: zinc finger protein ZAT1-like
TrEMBLR0GLJ70.0R0GLJ7_9BRAS; Uncharacterized protein
STRINGXP_006303748.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.16e-75C2H2-like zinc finger protein