PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011873m
Common NameCARUB_v10011873mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 379aa    MW: 41893 Da    PI: 5.4905
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011873mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57394.31.2e-29160243297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      +fqr+w+e+Dei++L+Gl+d+k++tg             vkks+sf+vsk q++eK+r+LKkK++++v kak+g+epsf+k+hd+k+felsk  
  Carubv10011873m 160 YFQRVWTEDDEIAVLKGLMDYKNDTG------------LVKKSVSFDVSKIQFMEKLRSLKKKYENNVGKAKNGEEPSFAKAHDRKTFELSKLA 241
                      79************************............89****************************************************** PP

           DUF573  96 Wg 97 
                      Wg
  Carubv10011873m 242 WG 243
                      *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.3E-23161243IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSRKRFNPLE DPPTASSSEE DDELDAPIED GEEIVGNSSS DEEDDDVPSK NSAPPKNTVL  60
LLAAPARKLS EDSESGSEEE TESDSEPQKK DQFLTKPVIE TKNLVVKEIK KVKASEKSVG  120
KRSHEMDEGG VSTHVKRVKK VSGEDDKKNA GGCEETKKTY FQRVWTEDDE IAVLKGLMDY  180
KNDTGLVKKS VSFDVSKIQF MEKLRSLKKK YENNVGKAKN GEEPSFAKAH DRKTFELSKL  240
AWGANGMALD SAVKSNGKSK KSSKSKKVAS VKQELDSSLP NGKSFEDEVA NKEEVSLLGV  300
LETDVFAKSS SLVKLLARVG LDELAAHQGL SRLASEDKKR LEEQWKALQV TEFEFFLQKS  360
GVIHEVMKKI TEAFRSNI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011873m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633242.10.0LOW QUALITY PROTEIN: probable transcription factor At1g11510
SwissprotC0SUU61e-116STKLA_ARATH; Probable transcription factor At1g11510
TrEMBLR0I1M20.0R0I1M2_9BRAS; Uncharacterized protein
STRINGXP_006303221.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.11e-105DNA-binding storekeeper protein-related transcriptional regulator