PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011679m
Common NameCARUB_v10011679mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 274aa    MW: 31486.1 Da    PI: 10.0411
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011679mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.7e-144690147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Carubv10011679m 46 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 90
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-164096IPR009057Homeodomain-like
PROSITE profilePS5129415.5074195IPR017930Myb domain
TIGRFAMsTIGR015577.5E-184493IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.0E-74496IPR009057Homeodomain-like
SMARTSM007172.9E-114593IPR001005SANT/Myb domain
PfamPF002498.4E-124690IPR001005SANT/Myb domain
CDDcd001671.30E-84891No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MMNSPVFNTL THTATTIPVT IRKNTMSFLE DPMKKIRKPY TITKSRENWT EQEHDKFLEA  60
LHLFDRDWKK IEAFVGSKTV IQIRSHAQKY FLKVQKNGTN EHLPPPRPKR KAKHPYPQKA  120
PKSVALTSSN ALLQHDYLYS TDSQPVISCT PKHGFVRCNV NTPNSMIKEE LGVPENCCST  180
SGSRDKQRTR TVTEKNDQES CGKPHRVMPN FAEVYNFIGS VFDPKTTDHV QRLKEMDPIN  240
LETVILLMRN LSVNLRSPEF EEQRKLISSY NAK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011679m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480196.10.0PREDICTED: protein REVEILLE 3
SwissprotQ6R0H01e-171RVE3_ARATH; Protein REVEILLE 3
TrEMBLR0GTE50.0R0GTE5_9BRAS; Uncharacterized protein
STRINGXP_006306158.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.11e-159MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]